RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 TMEM67Q5HYA8 995 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 SYDE1Q6ZW31 735 aaPredicted RBP5.99□□□□□ -1.45
NUP54-212ENST00000513248 COX4I2Q96KJ9 171 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 CNNM2Q9H8M5 875 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 SEMA3GQ9NS98 782 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 C19orf73Q9NVV2 129 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 GMIPQ9P107 970 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 EFR3BQ9Y2G0 817 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 INPP5FQ9Y2H2 1132 aa5.99□□□□□ -1.45
NUP54-212ENST00000513248 CBX7O95931 251 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 KRT1P04264 644 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 KIR3DL1P43629 444 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 GIPRP48546 466 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 MLECQ14165 292 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 LILRA6Q6PI73 481 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 PRR23BQ6ZRT6 265 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 AMIGO3Q86WK7 504 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 TAB3Q8N5C8 712 aaPredicted RBP5.98□□□□□ -1.45
NUP54-212ENST00000513248 FBXO15Q8NCQ5 510 aaPredicted RBP5.98□□□□□ -1.45
NUP54-212ENST00000513248 VWCEQ96DN2 955 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 ATG4CQ96DT6 458 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 SHDQ96IW2 340 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 ANTXR1Q9H6X2 564 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 CARS2Q9HA77 564 aaKnown RBP5.98□□□□□ -1.45
NUP54-212ENST00000513248 PPT2Q9UMR5 302 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 CAPN6Q9Y6Q1 641 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 WDR62O43379 1518 aa5.98□□□□□ -1.45
NUP54-212ENST00000513248 NFIBO00712 420 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 TNFRSF10CO14798 259 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 ZSCAN22P10073 491 aaPredicted RBP5.97□□□□□ -1.45
NUP54-212ENST00000513248 IMPDH2P12268 514 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 LCE5AQ5TCM9 118 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 CDKAL1Q5VV42 579 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 INTS3Q68E01 1043 aaKnown RBP5.97□□□□□ -1.45
NUP54-212ENST00000513248 GK5Q6ZS86 529 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 THAP5Q7Z6K1 395 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 CAPN10Q9HC96 672 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 CEP131Q9UPN4 1083 aa5.97□□□□□ -1.45
NUP54-212ENST00000513248 RBAK-RBAKDNI3L0D1 243 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 C1QTNF9P0C862 333 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 ACRP10323 421 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 NASPP49321 788 aaPredicted RBP5.96□□□□□ -1.46
NUP54-212ENST00000513248 LRRFIP1Q32MZ4 808 aaKnown RBP5.96□□□□□ -1.46
NUP54-212ENST00000513248 NAALADL2Q58DX5 795 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 OVOS1Q6IE37 1185 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 TTLL10Q6ZVT0 673 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 MCF2L2Q86YR7 1114 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 CCDC74BQ96LY2 380 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 HSPA12BQ96MM6 686 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 KRTAP4-5Q9BYR2 181 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 ATP13A1Q9HD20 1204 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 ST14Q9Y5Y6 855 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 NCANO14594 1321 aa5.96□□□□□ -1.46
NUP54-212ENST00000513248 H3BS24 57 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 RGS13O14921 159 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 UBOX5O94941 541 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 NME1P15531 152 aaKnown RBP5.95□□□□□ -1.46
NUP54-212ENST00000513248 MCM4P33991 863 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 TNK2Q07912 1038 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 ARSHQ5FYA8 562 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 LSRQ86X29 649 aaPredicted RBP5.95□□□□□ -1.46
NUP54-212ENST00000513248 PHACTR4Q8IZ21 702 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 BAHD1Q8TBE0 780 aaPredicted RBP5.95□□□□□ -1.46
NUP54-212ENST00000513248 PIWIL2Q8TC59 973 aaKnown RBP5.95□□□□□ -1.46
NUP54-212ENST00000513248 KIF2CQ99661 725 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 STRIP2Q9ULQ0 834 aa5.95□□□□□ -1.46
NUP54-212ENST00000513248 URB2Q14146 1524 aaKnown RBP5.94□□□□□ -1.46
NUP54-212ENST00000513248 PRRG2O14669 202 aa5.94□□□□□ -1.46
NUP54-212ENST00000513248 MED14OSP0DP75 135 aa5.94□□□□□ -1.46
NUP54-212ENST00000513248 FAM169BQ8N8A8 192 aa5.94□□□□□ -1.46
NUP54-212ENST00000513248 RNF141Q8WVD5 230 aa5.94□□□□□ -1.46
NUP54-212ENST00000513248 Q96M66 194 aa5.94□□□□□ -1.46
NUP54-212ENST00000513248 ALPK1Q96QP1 1244 aa5.94□□□□□ -1.46
NUP54-212ENST00000513248 SRRTQ9BXP5 876 aaKnown RBP5.94□□□□□ -1.46
NUP54-212ENST00000513248 CD320Q9NPF0 282 aa5.94□□□□□ -1.46
NUP54-212ENST00000513248 RAG1P15918 1043 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 CCNFP41002 786 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 CASP7P55210 303 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 ARID5AQ03989 594 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 GNL2Q13823 731 aaKnown RBP5.93□□□□□ -1.46
NUP54-212ENST00000513248 NLRC3Q7RTR2 1065 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 C19orf47Q8N9M1 422 aaKnown RBP5.93□□□□□ -1.46
NUP54-212ENST00000513248 OR6P1Q8NGX9 317 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 KREMEN1Q96MU8 473 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 SLC9A7Q96T83 725 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 TM9SF2Q99805 663 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 NSUN3Q9H649 340 aaKnown RBP5.93□□□□□ -1.46
NUP54-212ENST00000513248 ABCC8Q09428 1581 aa5.93□□□□□ -1.46
NUP54-212ENST00000513248 TMEM253P0C7T8 217 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 RAC2P15153 192 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 GLDCP23378 1020 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 GBP1P32455 592 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 CHMP4BP1P59074 171 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 CCDC81Q6ZN84 652 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 VPS37DQ86XT2 251 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 DTWD2Q8NBA8 298 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 FERD3LQ96RJ6 166 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 ASPNQ9BXN1 380 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 ZSWIM5Q9P217 1185 aa5.92□□□□□ -1.46
NUP54-212ENST00000513248 KCNH3Q9ULD8 1083 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms