RNA–Protein interactions for RNA: ENST00000513143.5

PDPN-210, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,305 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-210ENST00000513143 CCDC196A0A1B0GTZ2 297 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 PALM3A6NDB9 673 aaPredicted RBP14.61□□□□□ -0.07
PDPN-210ENST00000513143 IRF6O14896 467 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 CDC27P30260 824 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 GJA5P36382 358 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 ZNF543Q08ER8 600 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 ZYXQ15942 572 aaKnown RBP14.61□□□□□ -0.07
PDPN-210ENST00000513143 USP17L2Q6R6M4 530 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 RASGRP2Q7LDG7 609 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 CCDC144CPQ8IYA2 1237 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 CTCFLQ8NI51 663 aaPredicted RBP14.61□□□□□ -0.07
PDPN-210ENST00000513143 LPAR1Q92633 364 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 CHMP4CQ96CF2 233 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 WNK4Q96J92 1243 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 C12orf42Q96LP6 360 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 NCOA5Q9HCD5 579 aaKnown RBP14.61□□□□□ -0.07
PDPN-210ENST00000513143 EMILIN3Q9NT22 766 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 RBM28Q9NW13 759 aaKnown RBP14.61□□□□□ -0.07
PDPN-210ENST00000513143 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.61□□□□□ -0.07
PDPN-210ENST00000513143 MAD2L2Q9UI95 211 aa14.61□□□□□ -0.07
PDPN-210ENST00000513143 LOC285556D6RIA3 1793 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 RAD21O60216 631 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 DHX16O60231 1041 aaKnown RBP14.6□□□□□ -0.07
PDPN-210ENST00000513143 PARP1P09874 1014 aaKnown RBP14.6□□□□□ -0.07
PDPN-210ENST00000513143 KIF5BP33176 963 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 ADD1P35611 737 aaKnown RBP14.6□□□□□ -0.07
PDPN-210ENST00000513143 SLC1A4P43007 532 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 GNAQP50148 359 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 FXR2P51116 673 aaKnown RBP eCLIP14.6□□□□□ -0.07
PDPN-210ENST00000513143 ASPRV1Q53RT3 343 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 CCDC83Q8IWF9 413 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 STAG2Q8N3U4 1231 aa14.6□□□□□ -0.07
PDPN-210ENST00000513143 BAZ2BQ9UIF8 2168 aaKnown RBP14.59□□□□□ -0.07
PDPN-210ENST00000513143 MYH6P13533 1939 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 A0A0G2JLL6 359 aaPredicted RBP14.59□□□□□ -0.07
PDPN-210ENST00000513143 ZBTB48P10074 688 aaPredicted RBP14.59□□□□□ -0.07
PDPN-210ENST00000513143 BMP3P12645 472 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 HMGCS2P54868 508 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 NTRK3Q16288 839 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 GPATCH4Q5T3I0 446 aaKnown RBP14.59□□□□□ -0.07
PDPN-210ENST00000513143 SPRYD7Q5W111 196 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 RGMBQ6NW40 437 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 PRRT2Q7Z6L0 340 aaPredicted RBP14.59□□□□□ -0.07
PDPN-210ENST00000513143 SPICE1Q8N0Z3 855 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 HHIPL1Q96JK4 782 aa14.59□□□□□ -0.07
PDPN-210ENST00000513143 FRMPD2Q68DX3 1309 aaPredicted RBP14.58□□□□□ -0.07
PDPN-210ENST00000513143 KLRF2D3W0D1 207 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 WDR46O15213 610 aaKnown RBP14.58□□□□□ -0.08
PDPN-210ENST00000513143 PLEKHA8P1O95397 391 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 CTDNEP1O95476 244 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 GOLGA8HP0CJ92 632 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 VCAM1P19320 739 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 SMARCA1P28370 1054 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 APLP1P51693 650 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 ZNF157P51786 506 aaPredicted RBP14.58□□□□□ -0.08
PDPN-210ENST00000513143 FUT2Q10981 343 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 DGKZQ13574 1117 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 CCDC96Q2M329 555 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 FAM83BQ5T0W9 1011 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 TMTC3Q6ZXV5 915 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 KCTD1Q719H9 257 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 SRBD1Q8N5C6 995 aaKnown RBP14.58□□□□□ -0.08
PDPN-210ENST00000513143 INTS4Q96HW7 963 aaKnown RBP14.58□□□□□ -0.08
PDPN-210ENST00000513143 NUP88Q99567 741 aaPredicted RBP14.58□□□□□ -0.08
PDPN-210ENST00000513143 LZTS2Q9BRK4 669 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 LLPHQ9BRT6 129 aaKnown RBP14.58□□□□□ -0.08
PDPN-210ENST00000513143 TMOD4Q9NZQ9 345 aa14.58□□□□□ -0.08
PDPN-210ENST00000513143 ABT1Q9ULW3 272 aaKnown RBP14.58□□□□□ -0.08
PDPN-210ENST00000513143 PARP14Q460N5 1801 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 CPLX1O14810 134 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 PLA2G6O60733 806 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 IFNAR1P17181 557 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 SNAPC2Q13487 334 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 TTBK2Q6IQ55 1244 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 CPLX2Q6PUV4 134 aaKnown RBP14.57□□□□□ -0.08
PDPN-210ENST00000513143 BTNL9Q6UXG8 535 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 RASAL3Q86YV0 1011 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 PROCA1Q8NCQ7 364 aaPredicted RBP14.57□□□□□ -0.08
PDPN-210ENST00000513143 NSUN7Q8NE18 718 aaKnown RBP14.57□□□□□ -0.08
PDPN-210ENST00000513143 MS4A4AQ96JQ5 239 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 GPCPD1Q9NPB8 672 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 CREBZFQ9NS37 354 aa14.57□□□□□ -0.08
PDPN-210ENST00000513143 RLFQ13129 1914 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 CDKL5O76039 1030 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 SLC10A3P09131 477 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 SLC4A3P48751 1232 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 GTF2A2P52657 109 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 MOGSQ13724 837 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 SLC35G1Q2M3R5 365 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 FASTKD5Q7L8L6 764 aaKnown RBP14.56□□□□□ -0.08
PDPN-210ENST00000513143 NBPF11Q86T75 865 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 CMTR1Q8N1G2 835 aaKnown RBP14.56□□□□□ -0.08
PDPN-210ENST00000513143 SMARCC2Q8TAQ2 1214 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 IPO9Q96P70 1041 aaKnown RBP14.56□□□□□ -0.08
PDPN-210ENST00000513143 SPZ1Q9BXG8 430 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 RIOX1Q9H6W3 641 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 FEM1BQ9UK73 627 aa14.56□□□□□ -0.08
PDPN-210ENST00000513143 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.56□□□□□ -0.08
PDPN-210ENST00000513143 TMEM232C9JQI7 657 aa14.55□□□□□ -0.08
PDPN-210ENST00000513143 CYTH3O43739 400 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms