RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 SLC25A27O95847 323 aa16.9■□□□□ 0.3
SPCS3-204ENST00000513139 POLR3DP05423 398 aaPredicted RBP16.9■□□□□ 0.3
SPCS3-204ENST00000513139 TRIM27P14373 513 aa16.9■□□□□ 0.3
SPCS3-204ENST00000513139 PLS1Q14651 629 aa16.9■□□□□ 0.3
SPCS3-204ENST00000513139 RIOK1Q9BRS2 568 aaKnown RBP16.9■□□□□ 0.3
SPCS3-204ENST00000513139 TSEN34Q9BSV6 310 aaKnown RBP16.9■□□□□ 0.3
SPCS3-204ENST00000513139 DIS3Q9Y2L1 958 aaKnown RBP16.9■□□□□ 0.3
SPCS3-204ENST00000513139 CHD7Q9P2D1 2997 aa16.89■□□□□ 0.3
SPCS3-204ENST00000513139 DCDC2CA8MYV0 355 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 PQBP1O60828 265 aaKnown RBP16.89■□□□□ 0.29
SPCS3-204ENST00000513139 FLOT1O75955 427 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 FAAP100Q0VG06 881 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 AKNAD1Q5T1N1 836 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 TMEM179Q6ZVK1 233 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 TIFAQ96CG3 184 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 TINF2Q9BSI4 451 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 REV3LO60673 3130 aa16.89■□□□□ 0.29
SPCS3-204ENST00000513139 MPHOSPH10O00566 681 aaKnown RBP16.88■□□□□ 0.29
SPCS3-204ENST00000513139 SURF6O75683 361 aaKnown RBP16.88■□□□□ 0.29
SPCS3-204ENST00000513139 PGK1P00558 417 aa16.88■□□□□ 0.29
SPCS3-204ENST00000513139 ATP8B2P98198 1209 aa16.88■□□□□ 0.29
SPCS3-204ENST00000513139 SLC44A5Q8NCS7 719 aa16.88■□□□□ 0.29
SPCS3-204ENST00000513139 NUP133Q8WUM0 1156 aa16.88■□□□□ 0.29
SPCS3-204ENST00000513139 GAS2L1Q99501 681 aaPredicted RBP16.88■□□□□ 0.29
SPCS3-204ENST00000513139 NOP58Q9Y2X3 529 aaKnown RBP16.88■□□□□ 0.29
SPCS3-204ENST00000513139 GBF1Q92538 1859 aa16.88■□□□□ 0.29
SPCS3-204ENST00000513139 BAZ2AQ9UIF9 1905 aaKnown RBP16.88■□□□□ 0.29
SPCS3-204ENST00000513139 TIMP1P01033 207 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 AKR1A1P14550 325 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 KIAA1755Q5JYT7 1200 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 CCDC174Q6PII3 467 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 ATG4CQ96DT6 458 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 CRNKL1Q9BZJ0 848 aaKnown RBP16.87■□□□□ 0.29
SPCS3-204ENST00000513139 SH2D4AQ9H788 454 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 TLR7Q9NYK1 1049 aaKnown RBP16.87■□□□□ 0.29
SPCS3-204ENST00000513139 ADAMTS5Q9UNA0 930 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 TMX2Q9Y320 296 aa16.87■□□□□ 0.29
SPCS3-204ENST00000513139 TRANK1O15050 2925 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 MCM3APO60318 1980 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 MAGEB6P1A0A0J9YX57 407 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 MOXD2PA6NHM9 499 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 WDR46O15213 610 aaKnown RBP16.86■□□□□ 0.29
SPCS3-204ENST00000513139 ADAMTS4O75173 837 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 ZNF865P0CJ78 1059 aaPredicted RBP16.86■□□□□ 0.29
SPCS3-204ENST00000513139 HNRNPUQ00839 825 aaKnown RBP eCLIP16.86■□□□□ 0.29
SPCS3-204ENST00000513139 TMEM132BQ14DG7 1078 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 ZNF792Q3KQV3 632 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 MFSD5Q6N075 450 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 RIOX2Q8IUF8 465 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 SPDYE1Q8NFV5 336 aaPredicted RBP16.86■□□□□ 0.29
SPCS3-204ENST00000513139 EAF2Q96CJ1 260 aaPredicted RBP16.86■□□□□ 0.29
SPCS3-204ENST00000513139 ASB2Q96Q27 587 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 MMP19Q99542 508 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.86■□□□□ 0.297e-7■□□□□ 9.2
SPCS3-204ENST00000513139 CCDC8Q9H0W5 538 aaPredicted RBP16.86■□□□□ 0.29
SPCS3-204ENST00000513139 ANTXR1Q9H6X2 564 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 VCPKMTQ9H867 229 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 ARHGEF10LQ9HCE6 1279 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 STARD7Q9NQZ5 370 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 MCM9Q9NXL9 1143 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 SWAP70Q9UH65 585 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 MROH7Q68CQ1 1323 aa16.86■□□□□ 0.29
SPCS3-204ENST00000513139 COPB2P35606 906 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 ACLYP53396 1101 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 PPIGQ13427 754 aaKnown RBP eCLIP16.85■□□□□ 0.292e-6■■□□□ 13.5
SPCS3-204ENST00000513139 KCTD2Q14681 263 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 RASIP1Q5U651 963 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 SIAH1Q8IUQ4 282 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 MSL3Q8N5Y2 521 aaKnown RBP16.85■□□□□ 0.29
SPCS3-204ENST00000513139 THEGQ9P2T0 379 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 TBX21Q9UL17 535 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 CNPY2Q9Y2B0 182 aa16.85■□□□□ 0.29
SPCS3-204ENST00000513139 PGK2P07205 417 aa16.84■□□□□ 0.29
SPCS3-204ENST00000513139 TAL1P17542 331 aaPredicted RBP16.84■□□□□ 0.29
SPCS3-204ENST00000513139 MRPS5P82675 430 aaKnown RBP16.84■□□□□ 0.29
SPCS3-204ENST00000513139 TTF1Q15361 905 aaPredicted RBP16.84■□□□□ 0.29
SPCS3-204ENST00000513139 SPICE1Q8N0Z3 855 aa16.84■□□□□ 0.29
SPCS3-204ENST00000513139 KLHDC9Q8NEP7 349 aa16.84■□□□□ 0.29
SPCS3-204ENST00000513139 ELP1O95163 1332 aa16.84■□□□□ 0.29
SPCS3-204ENST00000513139 XIRP2A4UGR9 3374 aa16.83■□□□□ 0.29
SPCS3-204ENST00000513139 BCAR3O75815 825 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 ICA1Q05084 483 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 TMEM240Q5SV17 173 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 CCSAPQ6IQ19 270 aaPredicted RBP16.83■□□□□ 0.28
SPCS3-204ENST00000513139 CLUAP1Q96AJ1 413 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 CCDC17Q96LX7 622 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 PBX4Q9BYU1 374 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 DCP1AQ9NPI6 582 aaPredicted RBP16.83■□□□□ 0.28
SPCS3-204ENST00000513139 TCF20Q9UGU0 1960 aaKnown RBP16.83■□□□□ 0.28
SPCS3-204ENST00000513139 SYNRGQ9UMZ2 1314 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 TNNQ9UQP3 1299 aa16.83■□□□□ 0.28
SPCS3-204ENST00000513139 SYNGAP1Q96PV0 1343 aa16.82■□□□□ 0.28
SPCS3-204ENST00000513139 CST5P28325 142 aaPredicted RBP16.82■□□□□ 0.28
SPCS3-204ENST00000513139 PLA2G5P39877 138 aa16.82■□□□□ 0.28
SPCS3-204ENST00000513139 STAT3P40763 770 aa16.82■□□□□ 0.28
SPCS3-204ENST00000513139 CDK7P50613 346 aa16.82■□□□□ 0.28
SPCS3-204ENST00000513139 EVX2Q03828 476 aa16.82■□□□□ 0.28
SPCS3-204ENST00000513139 KCNA10Q16322 511 aa16.82■□□□□ 0.28
SPCS3-204ENST00000513139 CCDC129Q6ZRS4 1044 aa16.82■□□□□ 0.28
SPCS3-204ENST00000513139 C16orf59Q7L2K0 433 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms