RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DDAH1O94760 285 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 NEFHP12036 1026 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 SCARF1Q14162 830 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 PDIA6Q15084 440 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 INF2Q27J81 1249 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 ZNF804AQ7Z570 1209 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 TRIM58Q8NG06 486 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 GPKOWQ92917 476 aaPredicted RBP eCLIP9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 EXOC4Q96A65 974 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 TAOK3Q9H2K8 898 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 LONP1P36776 959 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 SSR1P43307 286 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 KCNJ6P48051 423 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 CETN1Q12798 172 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 PPFIA1Q13136 1202 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 SEPT7Q16181 437 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 SLC9C1Q4G0N8 1177 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 ST7Q9NRC1 585 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 TECPR2O15040 1411 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 ADAMTS13Q76LX8 1427 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 MFAP3LO75121 409 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 HLA-DOAP06340 250 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 PRR29P0C7W0 189 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 ACTN2P35609 894 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 GYS2P54840 703 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 CHRNDQ07001 517 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 HINFPQ9BQA5 517 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 ABCB6Q9NP58 842 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 NBPF26B4DH59 902 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 NBPF10Q6P3W6 841 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC121Q6ZUS5 278 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 METTL16Q86W50 562 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC65Q8IXS2 484 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 NBPF15Q8N660 670 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 FAM204AQ9H8W3 233 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 LY9Q9HBG7 655 aa9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 ZCCHC17Q9NP64 241 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-216ENST00000512820 KIF20BQ96Q89 1820 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 CASP1P29466 404 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 RASGRF1Q13972 1273 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 B4GALNT4Q76KP1 1039 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 ZBTB1Q9Y2K1 713 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 UBN2Q6ZU65 1347 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 TADA3O75528 432 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 CCDC172P0C7W6 258 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 CDC25AP30304 524 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 HPDP32754 393 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 RFC4P35249 363 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 TRAPPC10P48553 1259 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 CFAP221Q4G0U5 840 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 SYCP3Q8IZU3 236 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 ZNF579Q8NAF0 562 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 SNX29Q8TEQ0 813 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 TBC1D5Q92609 795 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 WDR24Q96S15 920 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 SEC31BQ9NQW1 1179 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 ARPP21Q9UBL0 812 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 RWDD2AQ9UIY3 292 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 STK36Q9NRP7 1315 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 TMEM131LA2VDJ0 1609 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 B4DLN1 442 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 F8W031 263 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 PLCG2P16885 1265 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 INPP5BP32019 993 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 KRT31Q15323 416 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 ZNF658Q5TYW1 1059 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 STXBP4Q6ZWJ1 553 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 SYNE4Q8N205 404 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 IL17RAQ96F46 866 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 TUBGCP2Q9BSJ2 902 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 NLRC4Q9NPP4 1024 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 SOS2Q07890 1332 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 GSTTP1A0A1W2PQM5 241 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 ZMYND10O75800 440 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 TEX11Q8IYF3 940 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 PNMA1Q8ND90 353 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 IQCDQ96DY2 449 aa9.37□□□□□ -0.91
LIMCH1-216ENST00000512820 A6NNZ2 444 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 TEX33O43247 280 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 PRPF3O43395 683 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 TUBB8Q3ZCM7 444 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 OXER1Q8TDS5 423 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 PLEKHA4Q9H4M7 779 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 GPCPD1Q9NPB8 672 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 ADAM21Q9UKJ8 722 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 PAK2Q13177 524 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 CASP8Q14790 479 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 NCAPH2Q6IBW4 605 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 CTNNBL1Q8WYA6 563 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 LZTS2Q9BRK4 669 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 TUBE1Q9UJT0 475 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 PREX1Q8TCU6 1659 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 SMCO2A6NFE2 343 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 NDUFA10O95299 355 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 EEF1GP26641 437 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 TECP42680 631 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 HSPA2P54652 639 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 DYNLL1P63167 89 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 CALCRLQ16602 461 aa9.36□□□□□ -0.91
LIMCH1-216ENST00000512820 DCAF17Q5H9S7 520 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms