RNA–Protein interactions for RNA: ENST00000503942.1

UBE3D-205, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 3

Gene UBE3D, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-205ENST00000503942 GGNQ86UU5 652 aa7.28□□□□□ -1.24
UBE3D-205ENST00000503942 RNF141Q8WVD5 230 aa7.28□□□□□ -1.24
UBE3D-205ENST00000503942 G6PC3Q9BUM1 346 aa7.28□□□□□ -1.24
UBE3D-205ENST00000503942 ZNF281Q9Y2X9 895 aa7.28□□□□□ -1.24
UBE3D-205ENST00000503942 SLC22A31A6NKX4 558 aa7.27□□□□□ -1.25
UBE3D-205ENST00000503942 CELA3BP08861 270 aa7.27□□□□□ -1.25
UBE3D-205ENST00000503942 RANGAP1P46060 587 aaPredicted RBP7.27□□□□□ -1.25
UBE3D-205ENST00000503942 AFF3P51826 1226 aaKnown RBP7.27□□□□□ -1.25
UBE3D-205ENST00000503942 CCDC85BQ15834 202 aaPredicted RBP7.27□□□□□ -1.25
UBE3D-205ENST00000503942 NLRX1Q86UT6 975 aa7.27□□□□□ -1.25
UBE3D-205ENST00000503942 BCL11AQ9H165 835 aa7.27□□□□□ -1.25
UBE3D-205ENST00000503942 LRRN2O75325 713 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 EFEMP2O95967 443 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 ADRB1P08588 477 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 SRSF3P84103 164 aaKnown RBP7.26□□□□□ -1.25
UBE3D-205ENST00000503942 ADGRF1Q5T601 910 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 ERICH6BQ5W0A0 696 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 BORCS6Q96GS4 357 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 CRELD1Q96HD1 420 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 MIR1-1HGQ9H1L0 117 aa7.26□□□□□ -1.25
UBE3D-205ENST00000503942 TCF3P15923 654 aa7.25□□□□□ -1.25
UBE3D-205ENST00000503942 LIG3P49916 1009 aa7.25□□□□□ -1.25
UBE3D-205ENST00000503942 EPHB3P54753 998 aa7.25□□□□□ -1.25
UBE3D-205ENST00000503942 RPL6Q02878 288 aaKnown RBP7.25□□□□□ -1.25
UBE3D-205ENST00000503942 MEI1Q5TIA1 1274 aa7.25□□□□□ -1.25
UBE3D-205ENST00000503942 TMEM87AQ8NBN3 555 aa7.25□□□□□ -1.25
UBE3D-205ENST00000503942 FEZF2Q8TBJ5 459 aa7.25□□□□□ -1.25
UBE3D-205ENST00000503942 SHISA3A0PJX4 238 aa7.24□□□□□ -1.25
UBE3D-205ENST00000503942 N4BP3O15049 544 aa7.24□□□□□ -1.25
UBE3D-205ENST00000503942 ITGAEP38570 1179 aa7.24□□□□□ -1.25
UBE3D-205ENST00000503942 SP8Q8IXZ3 490 aa7.24□□□□□ -1.25
UBE3D-205ENST00000503942 EPB41L4AQ9HCS5 686 aaPredicted RBP7.24□□□□□ -1.25
UBE3D-205ENST00000503942 SIRT5Q9NXA8 310 aa7.24□□□□□ -1.25
UBE3D-205ENST00000503942 USP31Q70CQ4 1352 aa7.23□□□□□ -1.25
UBE3D-205ENST00000503942 IRS4O14654 1257 aaPredicted RBP7.23□□□□□ -1.25
UBE3D-205ENST00000503942 SCAMP3O14828 347 aaKnown RBP7.23□□□□□ -1.25
UBE3D-205ENST00000503942 YARSP54577 528 aaKnown RBP7.23□□□□□ -1.25
UBE3D-205ENST00000503942 HDLBPQ00341 1268 aaKnown RBP7.23□□□□□ -1.25
UBE3D-205ENST00000503942 FANCCQ00597 558 aa7.23□□□□□ -1.25
UBE3D-205ENST00000503942 FAM13CQ8NE31 585 aa7.23□□□□□ -1.25
UBE3D-205ENST00000503942 ASPNQ9BXN1 380 aa7.23□□□□□ -1.25
UBE3D-205ENST00000503942 UPK3BL1B0FP48 263 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 UPK3BL2E5RIL1 263 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 TFE3P19532 575 aaPredicted RBP7.22□□□□□ -1.25
UBE3D-205ENST00000503942 METTL16Q86W50 562 aaKnown RBP7.22□□□□□ -1.25
UBE3D-205ENST00000503942 SIRT2Q8IXJ6 389 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 SLFN12Q8IYM2 578 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 TEPSINQ96N21 525 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 CNTD2Q9H8S5 307 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 CRTAC1Q9NQ79 661 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 CORINQ9Y5Q5 1042 aa7.22□□□□□ -1.25
UBE3D-205ENST00000503942 USP2O75604 605 aaPredicted RBP7.21□□□□□ -1.26
UBE3D-205ENST00000503942 VIPR1P32241 457 aa7.21□□□□□ -1.26
UBE3D-205ENST00000503942 YBX1P67809 324 aaKnown RBP7.21□□□□□ -1.26
UBE3D-205ENST00000503942 TAF1CQ15572 869 aaPredicted RBP7.21□□□□□ -1.26
UBE3D-205ENST00000503942 MAP3K11Q16584 847 aa7.21□□□□□ -1.26
UBE3D-205ENST00000503942 TMEM201Q5SNT2 666 aa7.21□□□□□ -1.26
UBE3D-205ENST00000503942 C9orf131Q5VYM1 1079 aa7.21□□□□□ -1.26
UBE3D-205ENST00000503942 KREMEN1Q96MU8 473 aa7.21□□□□□ -1.26
UBE3D-205ENST00000503942 NRDCO43847 1150 aa7.2□□□□□ -1.26
UBE3D-205ENST00000503942 PLCG1P19174 1290 aa7.2□□□□□ -1.26
UBE3D-205ENST00000503942 ST13P50502 369 aaKnown RBP7.2□□□□□ -1.26
UBE3D-205ENST00000503942 RNF111Q6ZNA4 994 aa7.2□□□□□ -1.26
UBE3D-205ENST00000503942 LUC7LQ9NQ29 371 aaKnown RBP7.2□□□□□ -1.26
UBE3D-205ENST00000503942 METTL5Q9NRN9 209 aaKnown RBP7.2□□□□□ -1.26
UBE3D-205ENST00000503942 ZNF76P36508 570 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 KIR2DL1P43626 348 aaPredicted RBP7.19□□□□□ -1.26
UBE3D-205ENST00000503942 KIR2DL2P43627 348 aaPredicted RBP7.19□□□□□ -1.26
UBE3D-205ENST00000503942 TNNI2P48788 182 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 EFEMP1Q12805 493 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 CLEC16AQ2KHT3 1053 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 OLFML2BQ68BL8 750 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 ZDHHC14Q8IZN3 488 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 SYT8Q8NBV8 401 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 MAP6Q96JE9 813 aa7.19□□□□□ -1.26
UBE3D-205ENST00000503942 ZC3H12DA2A288 527 aaKnown RBP7.18□□□□□ -1.26
UBE3D-205ENST00000503942 CDR1P51861 262 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 RAD51AP2Q09MP3 1159 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 SLC14A2Q15849 920 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 VMACQ2NL98 169 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 TMEFF1Q8IYR6 380 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 ENOX1Q8TC92 643 aaKnown RBP7.18□□□□□ -1.26
UBE3D-205ENST00000503942 SYTL5Q8TDW5 730 aaPredicted RBP7.18□□□□□ -1.26
UBE3D-205ENST00000503942 MZB1Q8WU39 189 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 RNF34Q969K3 372 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 ADAM7Q9H2U9 754 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 TMPRSS5Q9H3S3 457 aa7.18□□□□□ -1.26
UBE3D-205ENST00000503942 PNLIPP16233 465 aa7.17□□□□□ -1.26
UBE3D-205ENST00000503942 RPL10P27635 214 aaKnown RBP7.17□□□□□ -1.26
UBE3D-205ENST00000503942 CNKSR3Q6P9H4 555 aa7.17□□□□□ -1.26
UBE3D-205ENST00000503942 CEP128Q6ZU80 1094 aa7.17□□□□□ -1.26
UBE3D-205ENST00000503942 WAPLQ7Z5K2 1190 aa7.17□□□□□ -1.26
UBE3D-205ENST00000503942 FAM129CQ86XR2 697 aa7.17□□□□□ -1.26
UBE3D-205ENST00000503942 JARID2Q92833 1246 aaPredicted RBP7.17□□□□□ -1.26
UBE3D-205ENST00000503942 ABLIM1O14639 778 aa7.16□□□□□ -1.26
UBE3D-205ENST00000503942 SDHBP21912 280 aa7.16□□□□□ -1.26
UBE3D-205ENST00000503942 ERVFRD-1P60508 538 aa7.16□□□□□ -1.26
UBE3D-205ENST00000503942 NMIQ13287 307 aaPredicted RBP7.16□□□□□ -1.26
UBE3D-205ENST00000503942 SPATS1Q496A3 300 aa7.16□□□□□ -1.26
UBE3D-205ENST00000503942 FRMD5Q7Z6J6 570 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms