RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ATG4CQ96DT6 458 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 TBX21Q9UL17 535 aa20.08■□□□□ 0.81
VIM-208ENST00000497849 XIRP2A4UGR9 3374 aa20.08■□□□□ 0.8
VIM-208ENST00000497849 NAV1Q8NEY1 1877 aa20.07■□□□□ 0.8
VIM-208ENST00000497849 TCF20Q9UGU0 1960 aaKnown RBP20.07■□□□□ 0.8
VIM-208ENST00000497849 IDH1O75874 414 aaKnown RBP20.07■□□□□ 0.8
VIM-208ENST00000497849 GNAI2P04899 355 aa20.07■□□□□ 0.8
VIM-208ENST00000497849 CT47B1P0C2W7 299 aaPredicted RBP20.07■□□□□ 0.8
VIM-208ENST00000497849 MRPS5P82675 430 aaKnown RBP20.07■□□□□ 0.8
VIM-208ENST00000497849 TMEM240Q5SV17 173 aa20.07■□□□□ 0.8
VIM-208ENST00000497849 ARHGAP45Q92619 1136 aa20.07■□□□□ 0.8
VIM-208ENST00000497849 TINF2Q9BSI4 451 aa20.07■□□□□ 0.8
VIM-208ENST00000497849 DCDC2CA8MYV0 355 aa20.06■□□□□ 0.8
VIM-208ENST00000497849 PGK2P07205 417 aa20.06■□□□□ 0.8
VIM-208ENST00000497849 ACLYP53396 1101 aa20.06■□□□□ 0.8
VIM-208ENST00000497849 TMEM132BQ14DG7 1078 aa20.06■□□□□ 0.8
VIM-208ENST00000497849 CCDC85BQ15834 202 aaPredicted RBP20.06■□□□□ 0.8
VIM-208ENST00000497849 MFSD5Q6N075 450 aa20.06■□□□□ 0.8
VIM-208ENST00000497849 GBF1Q92538 1859 aa20.06■□□□□ 0.8
VIM-208ENST00000497849 TSEN34Q9BSV6 310 aaKnown RBP20.06■□□□□ 0.8
VIM-208ENST00000497849 STARD7Q9NQZ5 370 aa20.06■□□□□ 0.8
VIM-208ENST00000497849 TLR7Q9NYK1 1049 aaKnown RBP20.06■□□□□ 0.8
VIM-208ENST00000497849 DBNLQ9UJU6 430 aaKnown RBP20.06■□□□□ 0.8
VIM-208ENST00000497849 MPHOSPH10O00566 681 aaKnown RBP20.05■□□□□ 0.8
VIM-208ENST00000497849 FLOT1O75955 427 aa20.05■□□□□ 0.8
VIM-208ENST00000497849 AKR1A1P14550 325 aa20.05■□□□□ 0.8
VIM-208ENST00000497849 HOXD11P31277 338 aaPredicted RBP20.05■□□□□ 0.8
VIM-208ENST00000497849 ZNF792Q3KQV3 632 aa20.05■□□□□ 0.8
VIM-208ENST00000497849 CCDC129Q6ZRS4 1044 aa20.05■□□□□ 0.8
VIM-208ENST00000497849 SIAH1Q8IUQ4 282 aa20.05■□□□□ 0.8
VIM-208ENST00000497849 RIOK1Q9BRS2 568 aaKnown RBP20.05■□□□□ 0.8
VIM-208ENST00000497849 RARSP54136 660 aaKnown RBP20.04■□□□□ 0.8
VIM-208ENST00000497849 POLA2Q14181 598 aa20.04■□□□□ 0.8
VIM-208ENST00000497849 CCSAPQ6IQ19 270 aaPredicted RBP20.04■□□□□ 0.8
VIM-208ENST00000497849 KLHDC9Q8NEP7 349 aa20.04■□□□□ 0.8
VIM-208ENST00000497849 MMP19Q99542 508 aa20.04■□□□□ 0.8
VIM-208ENST00000497849 ANTXR1Q9H6X2 564 aa20.04■□□□□ 0.8
VIM-208ENST00000497849 DIS3Q9Y2L1 958 aaKnown RBP20.04■□□□□ 0.8
VIM-208ENST00000497849 SYNRGQ9UMZ2 1314 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 SLC25A27O95847 323 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 POLR3DP05423 398 aaPredicted RBP20.03■□□□□ 0.8
VIM-208ENST00000497849 CSF2RAP15509 400 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 PPIGQ13427 754 aaKnown RBP eCLIP20.03■□□□□ 0.8
VIM-208ENST00000497849 CLEC10AQ8IUN9 316 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 SPICE1Q8N0Z3 855 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 NUP133Q8WUM0 1156 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 NECAB3Q96P71 396 aaPredicted RBP20.03■□□□□ 0.8
VIM-208ENST00000497849 ADAMTS5Q9UNA0 930 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 TNNQ9UQP3 1299 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 MYH8P13535 1937 aa20.03■□□□□ 0.8
VIM-208ENST00000497849 MOXD2PA6NHM9 499 aa20.02■□□□□ 0.8
VIM-208ENST00000497849 ACRP10323 421 aa20.02■□□□□ 0.8
VIM-208ENST00000497849 CDK7P50613 346 aa20.02■□□□□ 0.8
VIM-208ENST00000497849 ZNF365Q70YC5 407 aa20.02■□□□□ 0.8
VIM-208ENST00000497849 CCDC8Q9H0W5 538 aaPredicted RBP20.02■□□□□ 0.8
VIM-208ENST00000497849 MYADML2A6NDP7 307 aa20.01■□□□□ 0.79
VIM-208ENST00000497849 IGFBP4P22692 258 aa20.01■□□□□ 0.79
VIM-208ENST00000497849 OS9Q13438 667 aaPredicted RBP20.01■□□□□ 0.79
VIM-208ENST00000497849 KCNA10Q16322 511 aa20.01■□□□□ 0.79
VIM-208ENST00000497849 SAMD1Q6SPF0 538 aaPredicted RBP20.01■□□□□ 0.79
VIM-208ENST00000497849 TMEM179Q6ZVK1 233 aa20.01■□□□□ 0.79
VIM-208ENST00000497849 RIOX2Q8IUF8 465 aa20.01■□□□□ 0.79
VIM-208ENST00000497849 VCPKMTQ9H867 229 aa20.01■□□□□ 0.79
VIM-208ENST00000497849 TMX2Q9Y320 296 aa20.01■□□□□ 0.79
VIM-208ENST00000497849 BMP1P13497 986 aa20■□□□□ 0.79
VIM-208ENST00000497849 IRX5P78411 483 aaPredicted RBP20■□□□□ 0.79
VIM-208ENST00000497849 KCTD2Q14681 263 aa20■□□□□ 0.79
VIM-208ENST00000497849 CCDC174Q6PII3 467 aa20■□□□□ 0.79
VIM-208ENST00000497849 SSH3Q8TE77 659 aa20■□□□□ 0.79
VIM-208ENST00000497849 EAF2Q96CJ1 260 aaPredicted RBP20■□□□□ 0.79
VIM-208ENST00000497849 MCM9Q9NXL9 1143 aa20■□□□□ 0.79
VIM-208ENST00000497849 CXXC1Q9P0U4 656 aaPredicted RBP20■□□□□ 0.79
VIM-208ENST00000497849 WDR46O15213 610 aaKnown RBP19.99■□□□□ 0.79
VIM-208ENST00000497849 SURF6O75683 361 aaKnown RBP19.99■□□□□ 0.79
VIM-208ENST00000497849 TRIM27P14373 513 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 PSRC1Q6PGN9 363 aaPredicted RBP19.99■□□□□ 0.79
VIM-208ENST00000497849 TMEM199Q8N511 208 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 IL27Q8NEV9 243 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 C1QTNF1Q9BXJ1 281 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 NKX2-4Q9H2Z4 354 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 FBXO28Q9NVF7 368 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 CNPY2Q9Y2B0 182 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 YBX2Q9Y2T7 364 aaKnown RBP19.99■□□□□ 0.79
VIM-208ENST00000497849 ELP1O95163 1332 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 MROH7Q68CQ1 1323 aa19.99■□□□□ 0.79
VIM-208ENST00000497849 MAGEB6P1A0A0J9YX57 407 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 SNAI1O95863 264 aaPredicted RBP19.98■□□□□ 0.79
VIM-208ENST00000497849 CYP2D6P10635 497 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 AKR1B1P15121 316 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 STAT3P40763 770 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 RAB30Q15771 203 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 TMED8Q6PL24 325 aaPredicted RBP19.98■□□□□ 0.79
VIM-208ENST00000497849 REPS2Q8NFH8 660 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 GLT1D1Q96MS3 346 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 PPP1R12CQ9BZL4 782 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 ARHGEF10LQ9HCE6 1279 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 MSRAQ9UJ68 235 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 ZNF214Q9UL59 606 aaPredicted RBP19.98■□□□□ 0.79
VIM-208ENST00000497849 FAM184BQ9ULE4 1060 aa19.98■□□□□ 0.79
VIM-208ENST00000497849 CST5P28325 142 aaPredicted RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms