RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, human

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-210	ENST00000497815	ZNF654	Q8IZM8	581 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	NUP133	Q8WUM0	1156 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	IL17RA	Q96F46	866 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	LARP6	Q9BRS8	491 aa	Known RBP	13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	GPCPD1	Q9NPB8	672 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	MYH4	Q9Y623	1939 aa		13.93	□□□□□ -0.18
CUX1-210	ENST00000497815	LOC285556	D6RIA3	1793 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	KLF18	A0A0U1RQI7	1052 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L15	C9J2P7	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L13	C9JLJ4	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L11	C9JVI0	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L18	D6R9N7	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L22	D6RA61	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L17	D6RBQ6	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L19	D6RCP7	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L20	D6RJB6	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	WDR46	O15213	610 aa	Known RBP	13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	GOLGA8H	P0CJ92	632 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	PDHB	P11177	359 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	BMP3	P12645	472 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	RXRA	P19793	462 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	IRX3	P78415	501 aa	Predicted RBP	13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	USP17L24	Q0WX57	530 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	IK	Q13123	557 aa	Predicted RBP	13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	TOB2	Q14106	344 aa	Predicted RBP	13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	OTUD7B	Q6GQQ9	843 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	CCDC144CP	Q8IYA2	1237 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	TMTC2	Q8N394	836 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	DCAF4	Q8WV16	495 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	GMCL1	Q96IK5	515 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	BRPF3	Q9ULD4	1205 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	SLC12A7	Q9Y666	1083 aa		13.92	□□□□□ -0.18
CUX1-210	ENST00000497815	THSD7B	Q9C0I4	1608 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	FLOT1	O75955	427 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	CYP2C8	P10632	490 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	OSBP	P22059	807 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	SYNE3	Q6ZMZ3	975 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	CATSPERG	Q6ZRH7	1159 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	MICU3	Q86XE3	530 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	REM2	Q8IYK8	340 aa	Predicted RBP	13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	FBXO28	Q9NVF7	368 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	PTPRF	P10586	1907 aa		13.91	□□□□□ -0.18
CUX1-210	ENST00000497815	GOLGA8B	A8MQT2	603 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	TMEM232	C9JQI7	657 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	PARP1	P09874	1014 aa	Known RBP	13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	AK2	P54819	239 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	RABEP1	Q15276	862 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	TAF1C	Q15572	869 aa	Predicted RBP	13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	TTBK2	Q6IQ55	1244 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	APOA5	Q6Q788	366 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	SGMS1	Q86VZ5	419 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	PNMA3	Q9UL41	463 aa		13.9	□□□□□ -0.18
CUX1-210	ENST00000497815	ZBTB43	O43298	467 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	TRPA1	O75762	1119 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	DDAH1	O94760	285 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	SNHG28	P0DPA3	235 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	HOXA7	P31268	230 aa	Predicted RBP	13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	SLC16A2	P36021	539 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	ZNF543	Q08ER8	600 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	TROAP	Q12815	778 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	GRM4	Q14833	912 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	CTCFL	Q8NI51	663 aa	Predicted RBP	13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	KIFC2	Q96AC6	838 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	PARK7	Q99497	189 aa	Known RBP	13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	P2RX7	Q99572	595 aa	Known RBP	13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	AGXT2	Q9BYV1	514 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	CPVL	Q9H3G5	476 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	RNF186	Q9NXI6	227 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	SLC45A1	Q9Y2W3	748 aa		13.89	□□□□□ -0.19
CUX1-210	ENST00000497815	GOLGA8A	A7E2F4	631 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	TBC1D8	O95759	1140 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	ALDH1A1	P00352	501 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	CALM1	P0DP23	149 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	CALM2	P0DP24	149 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	CALM3	P0DP25	149 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	STAT2	P52630	851 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	MAP2K1	Q02750	393 aa	Predicted RBP	13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	STK3	Q13188	491 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	CRHR2	Q13324	411 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	COG2	Q14746	738 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	ANKRD1	Q15327	319 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	ASPRV1	Q53RT3	343 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	STAG2	Q8N3U4	1231 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	FBXL16	Q8N461	479 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	ATG4C	Q96DT6	458 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	SLF1	Q9BQI6	1058 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	BEGAIN	Q9BUH8	593 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	UBA5	Q9GZZ9	404 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	ZCCHC17	Q9NP64	241 aa	Known RBP	13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	MAD2L2	Q9UI95	211 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	FEM1B	Q9UK73	627 aa		13.88	□□□□□ -0.19
CUX1-210	ENST00000497815	KLRF2	D3W0D1	207 aa		13.87	□□□□□ -0.19
CUX1-210	ENST00000497815	DHX16	O60231	1041 aa	Known RBP	13.87	□□□□□ -0.19
CUX1-210	ENST00000497815	PEX10	O60683	326 aa		13.87	□□□□□ -0.19
CUX1-210	ENST00000497815	METAP2	P50579	478 aa	Known RBP eCLIP	13.87	□□□□□ -0.19	3e-6	■■■■□ 24.7
CUX1-210	ENST00000497815	SNAP25	P60880	206 aa		13.87	□□□□□ -0.19
CUX1-210	ENST00000497815	HERVK_113	P62684	666 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms