RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 MANSC4A6NHS7 340 aaPredicted RBP12.09□□□□□ -0.47
SKA1-204ENST00000488454 ARHGAP33O14559 1287 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 PRC1O43663 620 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 RAD21O60216 631 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 CETPP11597 493 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 USP14P54578 494 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 BACE1P56817 501 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 INHBEP58166 350 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 NOGQ13253 232 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 ADCK5Q3MIX3 580 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 TMEM67Q5HYA8 995 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 USP17L2Q6R6M4 530 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 CYB5R4Q7L1T6 521 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 FASTKD5Q7L8L6 764 aaKnown RBP12.09□□□□□ -0.47
SKA1-204ENST00000488454 CHST3Q7LGC8 479 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 DGKHQ86XP1 1220 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 TMTC2Q8N394 836 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 ZDHHC16Q969W1 377 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 TMEM87BQ96K49 555 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 TM6SF1Q9BZW5 370 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 GOPCQ9HD26 462 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 IL17RBQ9NRM6 502 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 CYP46A1Q9Y6A2 500 aa12.09□□□□□ -0.47
SKA1-204ENST00000488454 PLIN4Q96Q06 1357 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 NMT2O60551 498 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 TOP1P11387 765 aaKnown RBP12.08□□□□□ -0.48
SKA1-204ENST00000488454 CASTP20810 708 aaKnown RBP12.08□□□□□ -0.48
SKA1-204ENST00000488454 LSM11P83369 360 aaKnown RBP eCLIP12.08□□□□□ -0.48
SKA1-204ENST00000488454 SREBF2Q12772 1141 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 MTMR2Q13614 643 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 WTAPQ15007 396 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 ZYXQ15942 572 aaKnown RBP12.08□□□□□ -0.48
SKA1-204ENST00000488454 IFIT1BQ5T764 474 aaKnown RBP12.08□□□□□ -0.48
SKA1-204ENST00000488454 NFXL1Q6ZNB6 911 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 GADL1Q6ZQY3 521 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 MB21D2Q8IYB1 491 aaPredicted RBP12.08□□□□□ -0.48
SKA1-204ENST00000488454 ACER1Q8TDN7 264 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 MKL1Q969V6 931 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 MTA3Q9BTC8 594 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 KIAA1683Q9H0B3 1180 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 KAT14Q9H8E8 782 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 SYNPO2Q9UMS6 1093 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 KCNH4Q9UQ05 1017 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 TMX2Q9Y320 296 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 TNKSO95271 1327 aa12.08□□□□□ -0.48
SKA1-204ENST00000488454 WDR33Q9C0J8 1336 aaKnown RBP12.08□□□□□ -0.48
SKA1-204ENST00000488454 CCL15-CCL14A0A0B4J2E2 113 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 FAM155AB1AL88 458 aaPredicted RBP12.07□□□□□ -0.48
SKA1-204ENST00000488454 GJA5P36382 358 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 MAP2K2P36507 400 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 VEGFBP49765 207 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 PSEN2P49810 448 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 HMGCS2P54868 508 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 KIF23Q02241 960 aaPredicted RBP12.07□□□□□ -0.48
SKA1-204ENST00000488454 CCL15Q16663 113 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 OTUD7BQ6GQQ9 843 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 SYNE3Q6ZMZ3 975 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 RUFY3Q7L099 469 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 CLEC10AQ8IUN9 316 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 SIAH1Q8IUQ4 282 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 SPNS2Q8IVW8 549 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 DDX12PQ92771 950 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 ADAM33Q9BZ11 813 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 WDR19Q8NEZ3 1342 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 SIPA1L1O43166 1804 aa12.07□□□□□ -0.48
SKA1-204ENST00000488454 LAMB1P07942 1786 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 A0A0G2JLL6 359 aaPredicted RBP12.06□□□□□ -0.48
SKA1-204ENST00000488454 A0A1W2PRG0 241 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 CCDC69A6NI79 296 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 F5H6K3 240 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 RPS6KB1P23443 525 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 NOVP48745 357 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 RBM25P49756 843 aaKnown RBP12.06□□□□□ -0.48
SKA1-204ENST00000488454 EXOSC10Q01780 885 aaKnown RBP12.06□□□□□ -0.48
SKA1-204ENST00000488454 KLRC3Q07444 240 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 PABPC4Q13310 644 aaKnown RBP eCLIP12.06□□□□□ -0.48
SKA1-204ENST00000488454 SH3D19Q5HYK7 790 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 TYW1BQ6NUM6 668 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 PRRT2Q7Z6L0 340 aaPredicted RBP12.06□□□□□ -0.48
SKA1-204ENST00000488454 LRRC47Q8N1G4 583 aaKnown RBP12.06□□□□□ -0.48
SKA1-204ENST00000488454 ENAHQ8N8S7 591 aaPredicted RBP12.06□□□□□ -0.48
SKA1-204ENST00000488454 NKX2-3Q8TAU0 364 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 IGDCC4Q8TDY8 1250 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 ANKS1AQ92625 1134 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 LPAR1Q92633 364 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 KCNK17Q96T54 332 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 TMEM47Q9BQJ4 181 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 VCPKMTQ9H867 229 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 PLSCR2Q9NRY7 297 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 PDRG1Q9NUG6 133 aa12.06□□□□□ -0.48
SKA1-204ENST00000488454 ISY1Q9ULR0 285 aaKnown RBP12.06□□□□□ -0.48
SKA1-204ENST00000488454 AOC2O75106 756 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 CPA1P15085 419 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 ANTXR2P58335 489 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 SEC23AQ15436 765 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 SLFN13Q68D06 897 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 CATIPQ7Z7H3 387 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 PROCA1Q8NCQ7 364 aaPredicted RBP12.05□□□□□ -0.48
SKA1-204ENST00000488454 TBC1D32Q96NH3 1257 aa12.05□□□□□ -0.48
SKA1-204ENST00000488454 LRRC2Q9BYS8 371 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms