RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 MKL1Q969V6 931 aa17.72■□□□□ 0.43
TRIM54-204ENST00000488321 CHMP4CQ96CF2 233 aa17.72■□□□□ 0.43
TRIM54-204ENST00000488321 DSCC1Q9BVC3 393 aa17.72■□□□□ 0.43
TRIM54-204ENST00000488321 RNF41Q9H4P4 317 aaPredicted RBP17.72■□□□□ 0.43
TRIM54-204ENST00000488321 IVNS1ABPQ9Y6Y0 642 aa17.72■□□□□ 0.43
TRIM54-204ENST00000488321 FGRP09769 529 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 CHMLP26374 656 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 SLFN13Q68D06 897 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 SKAP1Q86WV1 359 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 GMCL1P1Q8NEA9 526 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 SLF1Q9BQI6 1058 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 MOV10L1Q9BXT6 1211 aaKnown RBP17.71■□□□□ 0.43
TRIM54-204ENST00000488321 NBPF3Q9H094 633 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 SPATC1LQ9H0A9 340 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 IL25Q9H293 177 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 IL17RBQ9NRM6 502 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 CTNNA3Q9UI47 895 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 PPP1R9AQ9ULJ8 1098 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 SYNPO2Q9UMS6 1093 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 MTMR7Q9Y216 660 aa17.71■□□□□ 0.43
TRIM54-204ENST00000488321 RAD50Q92878 1312 aa17.71■□□□□ 0.42
TRIM54-204ENST00000488321 PCP11498 1178 aaKnown RBP17.7■□□□□ 0.42
TRIM54-204ENST00000488321 CCL5P13501 91 aa17.7■□□□□ 0.42
TRIM54-204ENST00000488321 EN2P19622 333 aaPredicted RBP17.7■□□□□ 0.42
TRIM54-204ENST00000488321 RGS2P41220 211 aa17.7■□□□□ 0.42
TRIM54-204ENST00000488321 IMMTQ16891 758 aaKnown RBP17.7■□□□□ 0.42
TRIM54-204ENST00000488321 NCAPG2Q86XI2 1143 aa17.7■□□□□ 0.42
TRIM54-204ENST00000488321 STAG1Q8WVM7 1258 aa17.7■□□□□ 0.42
TRIM54-204ENST00000488321 RNF208Q9H0X6 261 aa17.7■□□□□ 0.42
TRIM54-204ENST00000488321 CTDP1Q9Y5B0 961 aaPredicted RBP17.7■□□□□ 0.42
TRIM54-204ENST00000488321 VWA5AO00534 786 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 BMP3P12645 472 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 ERCC3P19447 782 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 PTPREP23469 700 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 TMEM132BQ14DG7 1078 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 MORN1Q5T089 497 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 ESR2Q92731 530 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 KIFC2Q96AC6 838 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 UNC93B1Q9H1C4 597 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 CENPFP49454 3210 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 NEDD4P46934 1319 aa17.69■□□□□ 0.42
TRIM54-204ENST00000488321 HMGCRP04035 888 aa17.68■□□□□ 0.42
TRIM54-204ENST00000488321 ZKSCAN1P17029 563 aaPredicted RBP17.68■□□□□ 0.42
TRIM54-204ENST00000488321 MCCP23508 829 aa17.68■□□□□ 0.42
TRIM54-204ENST00000488321 SLC1A4P43007 532 aa17.68■□□□□ 0.42
TRIM54-204ENST00000488321 IKQ13123 557 aaPredicted RBP17.68■□□□□ 0.42
TRIM54-204ENST00000488321 MAP2K5Q13163 448 aa17.68■□□□□ 0.42
TRIM54-204ENST00000488321 PRPF38AQ8NAV1 312 aaKnown RBP17.68■□□□□ 0.42
TRIM54-204ENST00000488321 SHCBP1Q8NEM2 672 aa17.68■□□□□ 0.42
TRIM54-204ENST00000488321 TRIB2Q92519 343 aa17.68■□□□□ 0.42
TRIM54-204ENST00000488321 SLC15A5A6NIM6 579 aa17.67■□□□□ 0.42
TRIM54-204ENST00000488321 XRCC5P13010 732 aaKnown RBP17.67■□□□□ 0.42
TRIM54-204ENST00000488321 SLC4A3P48751 1232 aa17.67■□□□□ 0.42
TRIM54-204ENST00000488321 USP6NLQ92738 828 aa17.67■□□□□ 0.42
TRIM54-204ENST00000488321 APBA2Q99767 749 aa17.67■□□□□ 0.42
TRIM54-204ENST00000488321 MROH8Q9H579 483 aa17.67■□□□□ 0.42
TRIM54-204ENST00000488321 FEM1BQ9UK73 627 aa17.67■□□□□ 0.42
TRIM54-204ENST00000488321 ADAMTS5Q9UNA0 930 aa17.67■□□□□ 0.42
TRIM54-204ENST00000488321 MYH8P13535 1937 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 TMEM232C9JQI7 657 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 ZBED4O75132 1171 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 SLC25A27O95847 323 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 CENPBP07199 599 aaPredicted RBP17.66■□□□□ 0.42
TRIM54-204ENST00000488321 STAT3P40763 770 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 TRIM32Q13049 653 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 GRB14Q14449 540 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 CCL14Q16627 93 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 TRMT44Q8IYL2 757 aaKnown RBP17.66■□□□□ 0.42
TRIM54-204ENST00000488321 GMCL1Q96IK5 515 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 ZKSCAN3Q9BRR0 538 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 TCP11L1Q9NUJ3 509 aa17.66■□□□□ 0.42
TRIM54-204ENST00000488321 GREB1LQ9C091 1923 aaPredicted RBP17.65■□□□□ 0.42
TRIM54-204ENST00000488321 B4E1Z4 1266 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 SGSM2O43147 1006 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 STRNO43815 780 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 KDM4AO75164 1064 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 GJB1P08034 283 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 TOP1P11387 765 aaKnown RBP17.65■□□□□ 0.42
TRIM54-204ENST00000488321 ADORA2AP29274 412 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 STAT2P52630 851 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 PTH1RQ03431 593 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 CCDC96Q2M329 555 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 KCTD1Q719H9 257 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 RASGRP2Q7LDG7 609 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 DPP9Q86TI2 863 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 RIOX2Q8IUF8 465 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 CPXCR1Q8N123 301 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 NKX2-3Q8TAU0 364 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 DEFB118Q96PH6 123 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 TMEM47Q9BQJ4 181 aa17.65■□□□□ 0.42
TRIM54-204ENST00000488321 ZNF214Q9UL59 606 aaPredicted RBP17.65■□□□□ 0.42
TRIM54-204ENST00000488321 FCER1AP12319 257 aa17.64■□□□□ 0.41
TRIM54-204ENST00000488321 PRKAR2AP13861 404 aaKnown RBP17.64■□□□□ 0.41
TRIM54-204ENST00000488321 NOVP48745 357 aa17.64■□□□□ 0.41
TRIM54-204ENST00000488321 SNRNP48Q6IEG0 339 aaKnown RBP17.64■□□□□ 0.41
TRIM54-204ENST00000488321 FAM160B2Q86V87 743 aa17.64■□□□□ 0.41
TRIM54-204ENST00000488321 IQCA1Q86XH1 822 aa17.64■□□□□ 0.41
TRIM54-204ENST00000488321 REPS2Q8NFH8 660 aa17.64■□□□□ 0.41
TRIM54-204ENST00000488321 U2AF1L4Q8WU68 220 aaKnown RBP17.64■□□□□ 0.41
TRIM54-204ENST00000488321 CHURC1Q8WUH1 139 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms