RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PUM1Q14671 1186 aaKnown RBP eCLIP6.69□□□□□ -1.34
SMC4-220ENST00000488017 SIRT2Q8IXJ6 389 aa6.69□□□□□ -1.34
SMC4-220ENST00000488017 FEZF2Q8TBJ5 459 aa6.69□□□□□ -1.34
SMC4-220ENST00000488017 CRELD1Q96HD1 420 aa6.69□□□□□ -1.34
SMC4-220ENST00000488017 CCDC74BQ96LY2 380 aa6.69□□□□□ -1.34
SMC4-220ENST00000488017 TEPSINQ96N21 525 aa6.69□□□□□ -1.34
SMC4-220ENST00000488017 ASCC2Q9H1I8 757 aaPredicted RBP6.69□□□□□ -1.34
SMC4-220ENST00000488017 CNTD2Q9H8S5 307 aa6.69□□□□□ -1.34
SMC4-220ENST00000488017 AKAP8O43823 692 aaKnown RBP6.68□□□□□ -1.34
SMC4-220ENST00000488017 PRPF40AO75400 957 aaKnown RBP6.68□□□□□ -1.34
SMC4-220ENST00000488017 BPNT1O95861 308 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 PNLIPP16233 465 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 VIPR1P32241 457 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 EPHB3P54753 998 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 SLC14A2Q15849 920 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 SYTL5Q8TDW5 730 aaPredicted RBP6.68□□□□□ -1.34
SMC4-220ENST00000488017 MAP6Q96JE9 813 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 NOC4LQ9BVI4 516 aaKnown RBP6.68□□□□□ -1.34
SMC4-220ENST00000488017 EPB41L4AQ9HCS5 686 aaPredicted RBP6.68□□□□□ -1.34
SMC4-220ENST00000488017 ZMYM5Q9UJ78 669 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 PRR36Q9H6K5 1346 aa6.68□□□□□ -1.34
SMC4-220ENST00000488017 CILPO75339 1184 aa6.67□□□□□ -1.34
SMC4-220ENST00000488017 USP2O75604 605 aaPredicted RBP6.67□□□□□ -1.34
SMC4-220ENST00000488017 EFEMP2O95967 443 aa6.67□□□□□ -1.34
SMC4-220ENST00000488017 RPL10P27635 214 aaKnown RBP6.67□□□□□ -1.34
SMC4-220ENST00000488017 USHBP1Q8N6Y0 703 aa6.67□□□□□ -1.34
SMC4-220ENST00000488017 VWCEQ96DN2 955 aa6.67□□□□□ -1.34
SMC4-220ENST00000488017 LUC7LQ9NQ29 371 aaKnown RBP6.67□□□□□ -1.34
SMC4-220ENST00000488017 NMIQ13287 307 aaPredicted RBP6.66□□□□□ -1.34
SMC4-220ENST00000488017 WAPLQ7Z5K2 1190 aa6.66□□□□□ -1.34
SMC4-220ENST00000488017 DAGLBQ8NCG7 672 aa6.66□□□□□ -1.34
SMC4-220ENST00000488017 PHC3Q8NDX5 983 aa6.66□□□□□ -1.34
SMC4-220ENST00000488017 HDAC8Q9BY41 377 aa6.66□□□□□ -1.34
SMC4-220ENST00000488017 TLR6Q9Y2C9 796 aa6.66□□□□□ -1.34
SMC4-220ENST00000488017 ZC3H12DA2A288 527 aaKnown RBP6.65□□□□□ -1.34
SMC4-220ENST00000488017 FAM221AA4D161 298 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 OVOL3O00110 214 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 ST13P50502 369 aaKnown RBP6.65□□□□□ -1.34
SMC4-220ENST00000488017 ERVFRD-1P60508 538 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 CNKSR3Q6P9H4 555 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 CEP128Q6ZU80 1094 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 TMEFF1Q8IYR6 380 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 ZDHHC14Q8IZN3 488 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 MZB1Q8WU39 189 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 REV1Q9UBZ9 1251 aa6.65□□□□□ -1.34
SMC4-220ENST00000488017 CHURC1-FNTBB4DL54 471 aa6.64□□□□□ -1.35
SMC4-220ENST00000488017 CDR1P51861 262 aa6.64□□□□□ -1.35
SMC4-220ENST00000488017 PCBP3P57721 371 aaKnown RBP6.64□□□□□ -1.35
SMC4-220ENST00000488017 CHMP4BP1P59074 171 aa6.64□□□□□ -1.35
SMC4-220ENST00000488017 RNF4P78317 190 aa6.64□□□□□ -1.35
SMC4-220ENST00000488017 BNC2Q6ZN30 1099 aaPredicted RBP6.64□□□□□ -1.35
SMC4-220ENST00000488017 FRMD5Q7Z6J6 570 aa6.64□□□□□ -1.35
SMC4-220ENST00000488017 ZNF655Q8N720 491 aaPredicted RBP6.64□□□□□ -1.35
SMC4-220ENST00000488017 GATAD2BQ8WXI9 593 aa6.64□□□□□ -1.35
SMC4-220ENST00000488017 HHIPL1Q96JK4 782 aa6.64□□□□□ -1.35
SMC4-220ENST00000488017 SSU72P8A0A1W2PR75 194 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 MPOP05164 745 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 LMNB2Q03252 620 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 PLP2Q04941 152 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 TMEM62Q0P6H9 643 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 MEI1Q5TIA1 1274 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 C14orf37Q86TY3 774 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 FAM129CQ86XR2 697 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 PHACTR4Q8IZ21 702 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 LINC01356Q8N9X3 169 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 LINC00116Q8NCU8 138 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 TCTN2Q96GX1 697 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 FOXP3Q9BZS1 431 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 KLHL3Q9UH77 587 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 TCFL5Q9UL49 500 aa6.63□□□□□ -1.35
SMC4-220ENST00000488017 TMEM82A0PJX8 343 aa6.62□□□□□ -1.35
SMC4-220ENST00000488017 HTR3BO95264 441 aa6.62□□□□□ -1.35
SMC4-220ENST00000488017 GBP1P32455 592 aa6.62□□□□□ -1.35
SMC4-220ENST00000488017 CAMK2GQ13555 558 aaPredicted RBP6.62□□□□□ -1.35
SMC4-220ENST00000488017 TAF1CQ15572 869 aaPredicted RBP6.62□□□□□ -1.35
SMC4-220ENST00000488017 KIF2CQ99661 725 aa6.62□□□□□ -1.35
SMC4-220ENST00000488017 GPR20Q99678 358 aa6.62□□□□□ -1.35
SMC4-220ENST00000488017 ARID3AQ99856 593 aa6.62□□□□□ -1.35
SMC4-220ENST00000488017 TNFRSF10DQ9UBN6 386 aa6.62□□□□□ -1.35
SMC4-220ENST00000488017 RGS13O14921 159 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 F13A1P00488 732 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 ARL4AP40617 200 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 RTP1P59025 263 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 CAP1Q01518 475 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 LAPTM5Q13571 262 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 VMACQ2NL98 169 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 GALNT18Q6P9A2 607 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 LDHDQ86WU2 507 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 IGDCC3Q8IVU1 814 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 DUSP9Q99956 384 aaKnown RBP6.61□□□□□ -1.35
SMC4-220ENST00000488017 ADAM7Q9H2U9 754 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 KLHL14Q9P2G3 628 aa6.61□□□□□ -1.35
SMC4-220ENST00000488017 WTIPA6NIX2 430 aaPredicted RBP6.6□□□□□ -1.35
SMC4-220ENST00000488017 ENDOUP21128 410 aaKnown RBP6.6□□□□□ -1.35
SMC4-220ENST00000488017 SDHBP21912 280 aa6.6□□□□□ -1.35
SMC4-220ENST00000488017 HHIPL2Q6UWX4 724 aa6.6□□□□□ -1.35
SMC4-220ENST00000488017 SYT8Q8NBV8 401 aa6.6□□□□□ -1.35
SMC4-220ENST00000488017 FCRL2Q96LA5 508 aaPredicted RBP6.6□□□□□ -1.35
SMC4-220ENST00000488017 PLCD4Q9BRC7 762 aa6.6□□□□□ -1.35
SMC4-220ENST00000488017 POLR3KQ9Y2Y1 108 aaPredicted RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms