RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 KIF23Q02241 960 aaPredicted RBP16.42■□□□□ 0.22
CUX1-209ENST00000487284 CHADLQ6NUI6 762 aa16.42■□□□□ 0.22
CUX1-209ENST00000487284 CAVIN1Q6NZI2 390 aaKnown RBP16.42■□□□□ 0.22
CUX1-209ENST00000487284 PNMA1Q8ND90 353 aa16.42■□□□□ 0.22
CUX1-209ENST00000487284 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.42■□□□□ 0.226e-12■■■■■ 36.6
CUX1-209ENST00000487284 LEO1Q8WVC0 666 aaPredicted RBP16.42■□□□□ 0.22
CUX1-209ENST00000487284 ZKSCAN4Q969J2 545 aaPredicted RBP16.42■□□□□ 0.22
CUX1-209ENST00000487284 ZNF396Q96N95 335 aaPredicted RBP16.42■□□□□ 0.22
CUX1-209ENST00000487284 CFAP45Q9UL16 551 aa16.42■□□□□ 0.22
CUX1-209ENST00000487284 CNTNAP5Q8WYK1 1306 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 UBE2Q2LH0YL09 131 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 PRPF3O43395 683 aaKnown RBP16.41■□□□□ 0.22
CUX1-209ENST00000487284 PPP1R12BO60237 982 aaPredicted RBP16.41■□□□□ 0.22
CUX1-209ENST00000487284 PLEKHA8P1O95397 391 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 ASNSP08243 561 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 ATP2B2Q01814 1243 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 ICA1Q05084 483 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 TRIM29Q14134 588 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 GRM4Q14833 912 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 MOB2Q70IA6 237 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 CCDC84Q86UT8 332 aaPredicted RBP16.41■□□□□ 0.22
CUX1-209ENST00000487284 CMTR1Q8N1G2 835 aaKnown RBP16.41■□□□□ 0.22
CUX1-209ENST00000487284 SPATA32Q96LK8 384 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 TMEM47Q9BQJ4 181 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 ZNF408Q9H9D4 720 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 KANSL2Q9H9L4 492 aa16.41■□□□□ 0.22
CUX1-209ENST00000487284 TFIP11Q9UBB9 837 aaKnown RBP16.41■□□□□ 0.22
CUX1-209ENST00000487284 KIF28PB7ZC32 967 aa16.4■□□□□ 0.22
CUX1-209ENST00000487284 TTLL1O95922 423 aa16.4■□□□□ 0.22
CUX1-209ENST00000487284 EEF2P13639 858 aaKnown RBP16.4■□□□□ 0.22
CUX1-209ENST00000487284 KIF5BP33176 963 aa16.4■□□□□ 0.22
CUX1-209ENST00000487284 TMEM63CQ9P1W3 806 aa16.4■□□□□ 0.22
CUX1-209ENST00000487284 CLIP2Q9UDT6 1046 aa16.4■□□□□ 0.22
CUX1-209ENST00000487284 TRPM7Q96QT4 1865 aa16.39■□□□□ 0.21
CUX1-209ENST00000487284 ITGBL1O95965 494 aaPredicted RBP16.39■□□□□ 0.21
CUX1-209ENST00000487284 TOP1P11387 765 aaKnown RBP16.39■□□□□ 0.21
CUX1-209ENST00000487284 YY1P25490 414 aa16.39■□□□□ 0.21
CUX1-209ENST00000487284 TTLL12Q14166 644 aaPredicted RBP16.39■□□□□ 0.21
CUX1-209ENST00000487284 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.39■□□□□ 0.21
CUX1-209ENST00000487284 SIAH1Q8IUQ4 282 aa16.39■□□□□ 0.21
CUX1-209ENST00000487284 SCYL3Q8IZE3 742 aa16.39■□□□□ 0.21
CUX1-209ENST00000487284 LRRC47Q8N1G4 583 aaKnown RBP16.39■□□□□ 0.21
CUX1-209ENST00000487284 NYAP2Q9P242 653 aa16.39■□□□□ 0.21
CUX1-209ENST00000487284 PHIPQ8WWQ0 1821 aa16.39■□□□□ 0.21
CUX1-209ENST00000487284 U2AF2P26368 475 aaKnown RBP eCLIP16.38■□□□□ 0.21
CUX1-209ENST00000487284 IREB2P48200 963 aaKnown RBP16.38■□□□□ 0.21
CUX1-209ENST00000487284 AKAP17AQ02040 695 aaKnown RBP16.38■□□□□ 0.21
CUX1-209ENST00000487284 PKN1Q16512 942 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 MYSM1Q5VVJ2 828 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 CCDC82Q8N4S0 544 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 SRBD1Q8N5C6 995 aaKnown RBP16.38■□□□□ 0.21
CUX1-209ENST00000487284 USP28Q96RU2 1077 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 GINM1Q9NU53 330 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 RBM27Q9P2N5 1060 aaKnown RBP16.38■□□□□ 0.21
CUX1-209ENST00000487284 RCOR1Q9UKL0 485 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 A0A1W2PRG0 241 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 FSD2A1L4K1 749 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 MMP1P03956 469 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 ZNF445P59923 1031 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 MAP3K9P80192 1104 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 VGLL4Q14135 290 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 ZSCAN23Q3MJ62 389 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 PPP4R3BQ5MIZ7 849 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 NOL9Q5SY16 702 aaKnown RBP16.38■□□□□ 0.21
CUX1-209ENST00000487284 RASGRP2Q7LDG7 609 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 SYAP1Q96A49 352 aaPredicted RBP16.38■□□□□ 0.21
CUX1-209ENST00000487284 ISY1Q9ULR0 285 aaKnown RBP16.38■□□□□ 0.21
CUX1-209ENST00000487284 MTMR7Q9Y216 660 aa16.38■□□□□ 0.21
CUX1-209ENST00000487284 ECE1P42892 770 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 GNAQP50148 359 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 MAP3K11Q16584 847 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 ACER1Q8TDN7 264 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 MKL1Q969V6 931 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 PICK1Q9NRD5 415 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 RTEL1Q9NZ71 1219 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.37■□□□□ 0.21
CUX1-209ENST00000487284 MAD2L2Q9UI95 211 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 SNCAIPQ9Y6H5 919 aa16.37■□□□□ 0.21
CUX1-209ENST00000487284 PALM3A6NDB9 673 aaPredicted RBP16.36■□□□□ 0.21
CUX1-209ENST00000487284 CELF2O95319 508 aaKnown RBP16.36■□□□□ 0.21
CUX1-209ENST00000487284 PTPRAP18433 802 aa16.36■□□□□ 0.21
CUX1-209ENST00000487284 ARMC9Q7Z3E5 817 aa16.36■□□□□ 0.21
CUX1-209ENST00000487284 ZNF784Q8NCA9 323 aaPredicted RBP16.36■□□□□ 0.21
CUX1-209ENST00000487284 CLMNQ96JQ2 1002 aa16.36■□□□□ 0.21
CUX1-209ENST00000487284 FTOQ9C0B1 505 aaKnown RBP eCLIP16.36■□□□□ 0.21
CUX1-209ENST00000487284 ARHGEF10LQ9HCE6 1279 aa16.36■□□□□ 0.21
CUX1-209ENST00000487284 POLR3EQ9NVU0 708 aa16.36■□□□□ 0.21
CUX1-209ENST00000487284 CSADQ9Y600 493 aa16.36■□□□□ 0.21
CUX1-209ENST00000487284 V9GY48 417 aaPredicted RBP16.36■□□□□ 0.21
CUX1-209ENST00000487284 USP17L5A8MUK1 530 aa16.35■□□□□ 0.21
CUX1-209ENST00000487284 XBP1P17861 261 aa16.35■□□□□ 0.21
CUX1-209ENST00000487284 NASPP49321 788 aaPredicted RBP16.35■□□□□ 0.21
CUX1-209ENST00000487284 SAFBQ15424 915 aaKnown RBP eCLIP16.35■□□□□ 0.21
CUX1-209ENST00000487284 ANKRD13AQ8IZ07 590 aa16.35■□□□□ 0.21
CUX1-209ENST00000487284 STAG2Q8N3U4 1231 aa16.35■□□□□ 0.21
CUX1-209ENST00000487284 SHISA4Q96DD7 197 aa16.35■□□□□ 0.21
CUX1-209ENST00000487284 PGBD1Q96JS3 809 aa16.35■□□□□ 0.21
CUX1-209ENST00000487284 LZTS2Q9BRK4 669 aa16.35■□□□□ 0.21
CUX1-209ENST00000487284 GBA2Q9HCG7 927 aaPredicted RBP16.35■□□□□ 0.21
CUX1-209ENST00000487284 YEATS4O95619 227 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms