RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 SYNGAP1Q96PV0 1343 aa5.65□□□□□ -1.51
PTCD3-216ENST00000487043 MEGF11A6BM72 1044 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 RGS13O14921 159 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 RNGTTO60942 597 aaKnown RBP5.64□□□□□ -1.51
PTCD3-216ENST00000487043 RAB11FIP3O75154 756 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 NFKBIBQ15653 356 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 DYMQ7RTS9 669 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 UBE3DQ7Z6J8 389 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 PPFIBP1Q86W92 1011 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 MRPL41Q8IXM3 137 aaKnown RBP5.64□□□□□ -1.51
PTCD3-216ENST00000487043 SLFN12Q8IYM2 578 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 LRRC47Q8N1G4 583 aaKnown RBP5.64□□□□□ -1.51
PTCD3-216ENST00000487043 ZSWIM2Q8NEG5 633 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 BAHD1Q8TBE0 780 aaPredicted RBP5.64□□□□□ -1.51
PTCD3-216ENST00000487043 DHRS1Q96LJ7 313 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 CCDC74BQ96LY2 380 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 BRINP2Q9C0B6 783 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 CYP4F12Q9HCS2 524 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 SSU72Q9NP77 194 aaKnown RBP5.64□□□□□ -1.51
PTCD3-216ENST00000487043 CD2APQ9Y5K6 639 aa5.64□□□□□ -1.51
PTCD3-216ENST00000487043 FAM95CA0A1B0GW59 222 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 IQCA1LA6NCM1 817 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 AGRPO00253 132 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 UBOX5O94941 541 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 F13BP05160 661 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 NEFMP07197 916 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 ADH5P11766 374 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 DRD2P14416 443 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 NTF4P34130 210 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 CCNFP41002 786 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 MASP1P48740 699 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 USP11P51784 963 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 PMS1P54277 932 aaKnown RBP5.63□□□□□ -1.51
PTCD3-216ENST00000487043 BBS9Q3SYG4 887 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 TMEM67Q5HYA8 995 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 PAOXQ6QHF9 649 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 ZBTB38Q8NAP3 1195 aaPredicted RBP5.63□□□□□ -1.51
PTCD3-216ENST00000487043 XAGE3Q8WTP9 111 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 PPP1R14AQ96A00 147 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 EPN3Q9H201 632 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 PIDD1Q9HB75 910 aa5.63□□□□□ -1.51
PTCD3-216ENST00000487043 SUCOQ9UBS9 1254 aaKnown RBP5.63□□□□□ -1.51
PTCD3-216ENST00000487043 ARID1BQ8NFD5 2236 aaPredicted RBP5.63□□□□□ -1.51
PTCD3-216ENST00000487043 C9IYK1 514 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 ADCY3O60266 1144 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 CLEC3AO75596 197 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 FOSL1P15407 271 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 SOX4Q06945 474 aaPredicted RBP5.62□□□□□ -1.51
PTCD3-216ENST00000487043 SLBPQ14493 270 aaKnown RBP eCLIP5.62□□□□□ -1.51
PTCD3-216ENST00000487043 DALRD3Q5D0E6 543 aaKnown RBP5.62□□□□□ -1.51
PTCD3-216ENST00000487043 PRAMEF13Q5VWM6 474 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 TP53INP2Q8IXH6 220 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 KCT2Q8NC54 265 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 ISL2Q96A47 359 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 ZNF512BQ96KM6 892 aaPredicted RBP5.62□□□□□ -1.51
PTCD3-216ENST00000487043 SLC26A8Q96RN1 970 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 APBA2Q99767 749 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 LRP2BPQ9P2M1 347 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 CFTRP13569 1480 aa5.62□□□□□ -1.51
PTCD3-216ENST00000487043 A0A1W2PQU0 124 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 ANKRD34BA5PLL1 514 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 CST3P01034 146 aaPredicted RBP5.61□□□□□ -1.51
PTCD3-216ENST00000487043 EPHX1P07099 455 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 NAT2P11245 290 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 L1CAMP32004 1257 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 ASPAP45381 313 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 AMPD3Q01432 767 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 CPSF6Q16630 551 aaKnown RBP eCLIP5.61□□□□□ -1.51
PTCD3-216ENST00000487043 LONRF2Q1L5Z9 754 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 HEATR6Q6AI08 1181 aaKnown RBP5.61□□□□□ -1.51
PTCD3-216ENST00000487043 CCDC144CPQ8IYA2 1237 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 SYNPOQ8N3V7 929 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 SMG8Q8ND04 991 aaKnown RBP5.61□□□□□ -1.51
PTCD3-216ENST00000487043 CYB5D2Q8WUJ1 264 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 FBLIM1Q8WUP2 373 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 SGSM3Q96HU1 749 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 FGD4Q96M96 766 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 FBXL18Q96ME1 805 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 CDC6Q99741 560 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 METTL22Q9BUU2 404 aaPredicted RBP5.61□□□□□ -1.51
PTCD3-216ENST00000487043 TMX1Q9H3N1 280 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 SUGCTQ9HAC7 445 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 CCDC39Q9UFE4 941 aa5.61□□□□□ -1.51
PTCD3-216ENST00000487043 CYP26A1O43174 497 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 TIAF1O95411 115 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 ZNF143P52747 638 aaPredicted RBP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 CBX2Q14781 532 aaPredicted RBP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 MSMPQ1L6U9 139 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 AXDND1Q5T1B0 1012 aaPredicted RBP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 FOXB2Q5VYV0 432 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 DCAF15Q66K64 600 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 ADAT2Q7Z6V5 191 aaKnown RBP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 VSIG10LQ86VR7 867 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.6□□□□□ -1.512e-60■□□□□ 8.9
PTCD3-216ENST00000487043 DHX37Q8IY37 1157 aaKnown RBP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 SMYD4Q8IYR2 804 aaPredicted RBP5.6□□□□□ -1.51
PTCD3-216ENST00000487043 LRRN4CLQ8ND94 238 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 TBC1D32Q96NH3 1257 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 HAUS7Q99871 368 aa5.6□□□□□ -1.51
PTCD3-216ENST00000487043 YIPF2Q9BWQ6 316 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms