RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 PRDM1O75626 825 aa29.35■■■□□ 2.29
LIME1-206ENST00000487026 GNAT2P19087 354 aa29.35■■■□□ 2.29
LIME1-206ENST00000487026 IFNL3Q8IZI9 196 aa29.35■■■□□ 2.29
LIME1-206ENST00000487026 FSD1Q9BTV5 496 aa29.35■■■□□ 2.29
LIME1-206ENST00000487026 MROH8Q9H579 483 aa29.35■■■□□ 2.29
LIME1-206ENST00000487026 MX1P20591 662 aa29.34■■■□□ 2.29
LIME1-206ENST00000487026 LRRFIP1Q32MZ4 808 aaKnown RBP29.34■■■□□ 2.29
LIME1-206ENST00000487026 YTHDC1Q96MU7 727 aaKnown RBP29.34■■■□□ 2.29
LIME1-206ENST00000487026 NUP88Q99567 741 aaPredicted RBP29.34■■■□□ 2.29
LIME1-206ENST00000487026 IGHA2P01877 340 aa29.33■■■□□ 2.29
LIME1-206ENST00000487026 ANKRD45Q5TZF3 282 aa29.33■■■□□ 2.29
LIME1-206ENST00000487026 ADAMTS5Q9UNA0 930 aa29.33■■■□□ 2.29
LIME1-206ENST00000487026 ROBO3Q96MS0 1386 aa29.33■■■□□ 2.29
LIME1-206ENST00000487026 COL6A1P12109 1028 aa29.32■■■□□ 2.28
LIME1-206ENST00000487026 SYN1P17600 705 aa29.32■■■□□ 2.28
LIME1-206ENST00000487026 CLIP2Q9UDT6 1046 aa29.32■■■□□ 2.28
LIME1-206ENST00000487026 DDX20Q9UHI6 824 aaKnown RBP29.32■■■□□ 2.28
LIME1-206ENST00000487026 VWA5AO00534 786 aa29.31■■■□□ 2.28
LIME1-206ENST00000487026 ZMYM1Q5SVZ6 1142 aa29.31■■■□□ 2.28
LIME1-206ENST00000487026 OLFML2BQ68BL8 750 aa29.31■■■□□ 2.28
LIME1-206ENST00000487026 ZNF444Q8N0Y2 327 aaPredicted RBP29.31■■■□□ 2.28
LIME1-206ENST00000487026 NYAP2Q9P242 653 aa29.31■■■□□ 2.28
LIME1-206ENST00000487026 PPP1R9AQ9ULJ8 1098 aa29.31■■■□□ 2.28
LIME1-206ENST00000487026 PARP14Q460N5 1801 aa29.31■■■□□ 2.28
LIME1-206ENST00000487026 SZT2Q5T011 3432 aa29.3■■■□□ 2.28
LIME1-206ENST00000487026 F5H6K3 240 aa29.3■■■□□ 2.28
LIME1-206ENST00000487026 FCER1AP12319 257 aa29.3■■■□□ 2.28
LIME1-206ENST00000487026 CYBAP13498 195 aa29.3■■■□□ 2.28
LIME1-206ENST00000487026 KLRC3Q07444 240 aa29.3■■■□□ 2.28
LIME1-206ENST00000487026 PRAMEF19Q5SWL8 479 aa29.3■■■□□ 2.28
LIME1-206ENST00000487026 GREB1LQ9C091 1923 aaPredicted RBP29.3■■■□□ 2.28
LIME1-206ENST00000487026 SALL3Q9BXA9 1300 aa29.29■■■□□ 2.28
LIME1-206ENST00000487026 SLC25A27O95847 323 aa29.29■■■□□ 2.28
LIME1-206ENST00000487026 ABRAQ8N0Z2 381 aa29.29■■■□□ 2.28
LIME1-206ENST00000487026 NACAP1Q9BZK3 213 aa29.29■■■□□ 2.28
LIME1-206ENST00000487026 SLC5A4Q9NY91 659 aa29.29■■■□□ 2.28
LIME1-206ENST00000487026 ZBTB47Q9UFB7 747 aaPredicted RBP29.29■■■□□ 2.28
LIME1-206ENST00000487026 IGKV6D-41A0A0C4DH26 115 aa29.28■■■□□ 2.28
LIME1-206ENST00000487026 STAT3P40763 770 aa29.28■■■□□ 2.28
LIME1-206ENST00000487026 LRRC26Q2I0M4 334 aa29.28■■■□□ 2.28
LIME1-206ENST00000487026 ANO1Q5XXA6 986 aa29.28■■■□□ 2.28
LIME1-206ENST00000487026 CCDC129Q6ZRS4 1044 aa29.28■■■□□ 2.28
LIME1-206ENST00000487026 RIOX2Q8IUF8 465 aa29.28■■■□□ 2.28
LIME1-206ENST00000487026 COL11A1P12107 1806 aaPredicted RBP29.28■■■□□ 2.28
LIME1-206ENST00000487026 ZNF236Q9UL36 1845 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 NDUFB10O96000 172 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 PGK2P07205 417 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 REPS2Q8NFH8 660 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 CEP95Q96GE4 821 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 MAML3Q96JK9 1138 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 MMP19Q99542 508 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 SENP6Q9GZR1 1112 aaPredicted RBP29.27■■■□□ 2.28
LIME1-206ENST00000487026 ZNF287Q9HBT7 754 aa29.27■■■□□ 2.28
LIME1-206ENST00000487026 ZNF214Q9UL59 606 aaPredicted RBP29.27■■■□□ 2.28
LIME1-206ENST00000487026 MSCO60682 206 aa29.26■■■□□ 2.27
LIME1-206ENST00000487026 FAM47AQ5JRC9 791 aa29.26■■■□□ 2.27
LIME1-206ENST00000487026 GDF15Q99988 308 aa29.26■■■□□ 2.27
LIME1-206ENST00000487026 SLF1Q9BQI6 1058 aa29.26■■■□□ 2.27
LIME1-206ENST00000487026 NAPBQ9H115 298 aa29.26■■■□□ 2.27
LIME1-206ENST00000487026 FRMPD3Q5JV73 1810 aa29.25■■■□□ 2.27
LIME1-206ENST00000487026 MTMR4Q9NYA4 1195 aa29.25■■■□□ 2.27
LIME1-206ENST00000487026 ZNFX1Q9P2E3 1918 aaKnown RBP29.24■■■□□ 2.27
LIME1-206ENST00000487026 PPARAQ07869 468 aa29.24■■■□□ 2.27
LIME1-206ENST00000487026 GJC2Q5T442 439 aaPredicted RBP29.24■■■□□ 2.27
LIME1-206ENST00000487026 MKL1Q969V6 931 aa29.24■■■□□ 2.27
LIME1-206ENST00000487026 TSPY3P0CV98 308 aa29.23■■■□□ 2.27
LIME1-206ENST00000487026 TSPY8P0CW00 308 aa29.23■■■□□ 2.27
LIME1-206ENST00000487026 PDE4BQ07343 736 aa29.23■■■□□ 2.27
LIME1-206ENST00000487026 HDAC1Q13547 482 aaPredicted RBP29.23■■■□□ 2.27
LIME1-206ENST00000487026 KCTD2Q14681 263 aa29.23■■■□□ 2.27
LIME1-206ENST00000487026 LRRC47Q8N1G4 583 aaKnown RBP29.23■■■□□ 2.27
LIME1-206ENST00000487026 INCENPQ9NQS7 918 aa29.23■■■□□ 2.27
LIME1-206ENST00000487026 FOXP2O15409 715 aa29.22■■■□□ 2.27
LIME1-206ENST00000487026 SEPT4O43236 478 aa29.22■■■□□ 2.27
LIME1-206ENST00000487026 TTLL1O95922 423 aa29.22■■■□□ 2.27
LIME1-206ENST00000487026 MAGEA10P43363 369 aaPredicted RBP29.22■■■□□ 2.27
LIME1-206ENST00000487026 SLC4A3P48751 1232 aa29.22■■■□□ 2.27
LIME1-206ENST00000487026 ATN1P54259 1190 aaPredicted RBP29.22■■■□□ 2.27
LIME1-206ENST00000487026 PDE1AP54750 535 aa29.22■■■□□ 2.27
LIME1-206ENST00000487026 TFAP4Q01664 338 aa29.22■■■□□ 2.27
LIME1-206ENST00000487026 PRPF38AQ8NAV1 312 aaKnown RBP29.22■■■□□ 2.27
LIME1-206ENST00000487026 NEDD1Q8NHV4 660 aa29.22■■■□□ 2.27
LIME1-206ENST00000487026 A0A1W2PPC1 479 aa29.21■■■□□ 2.27
LIME1-206ENST00000487026 SOX1O00570 391 aaPredicted RBP29.21■■■□□ 2.27
LIME1-206ENST00000487026 MYCNP04198 464 aaPredicted RBP29.21■■■□□ 2.27
LIME1-206ENST00000487026 SLC3A2P08195 630 aaKnown RBP29.21■■■□□ 2.27
LIME1-206ENST00000487026 CTDSPL2Q05D32 466 aa29.21■■■□□ 2.27
LIME1-206ENST00000487026 SNRNP48Q6IEG0 339 aaKnown RBP29.21■■■□□ 2.27
LIME1-206ENST00000487026 KIFC2Q96AC6 838 aa29.21■■■□□ 2.27
LIME1-206ENST00000487026 RIPK3Q9Y572 518 aa29.21■■■□□ 2.27
LIME1-206ENST00000487026 MYH4Q9Y623 1939 aa29.2■■■□□ 2.27
LIME1-206ENST00000487026 DNM1LO00429 736 aa29.2■■■□□ 2.26
LIME1-206ENST00000487026 BMP8BP34820 402 aa29.2■■■□□ 2.26
LIME1-206ENST00000487026 ZNF792Q3KQV3 632 aa29.2■■■□□ 2.26
LIME1-206ENST00000487026 VPS53Q5VIR6 699 aa29.2■■■□□ 2.26
LIME1-206ENST00000487026 CPXCR1Q8N123 301 aa29.2■■■□□ 2.26
LIME1-206ENST00000487026 CHMP4CQ96CF2 233 aa29.2■■■□□ 2.26
LIME1-206ENST00000487026 EVI5LQ96CN4 794 aa29.2■■■□□ 2.26
LIME1-206ENST00000487026 DNAH12Q6ZR08 3092 aa29.19■■■□□ 2.26
LIME1-206ENST00000487026 ARRDC4Q8NCT1 418 aa29.19■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms