RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 SPICE1Q8N0Z3 855 aa11.17□□□□□ -0.62
MCF2L-227ENST00000486806 NECAB1Q8N987 351 aa11.17□□□□□ -0.62
MCF2L-227ENST00000486806 CTCFLQ8NI51 663 aaPredicted RBP11.17□□□□□ -0.62
MCF2L-227ENST00000486806 SLKQ9H2G2 1235 aaPredicted RBP11.17□□□□□ -0.62
MCF2L-227ENST00000486806 NCOA5Q9HCD5 579 aaKnown RBP11.17□□□□□ -0.62
MCF2L-227ENST00000486806 CREBZFQ9NS37 354 aa11.17□□□□□ -0.62
MCF2L-227ENST00000486806 RBM28Q9NW13 759 aaKnown RBP11.17□□□□□ -0.62
MCF2L-227ENST00000486806 MYH4Q9Y623 1939 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 FAM155AB1AL88 458 aaPredicted RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 PLEKHA8P1O95397 391 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 PARP1P09874 1014 aaKnown RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 BMP3P12645 472 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 KIF5BP33176 963 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 ADD1P35611 737 aaKnown RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 SLC1A4P43007 532 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 CCT2P78371 535 aaKnown RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 FUT2Q10981 343 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 NTRK3Q16288 839 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 SLC35G1Q2M3R5 365 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 GPATCH4Q5T3I0 446 aaKnown RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 CCDC83Q8IWF9 413 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 STAG2Q8N3U4 1231 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 PROCA1Q8NCQ7 364 aaPredicted RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 MS4A4AQ96JQ5 239 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 NUP88Q99567 741 aaPredicted RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 NAP1L2Q9ULW6 460 aaPredicted RBP11.16□□□□□ -0.62
MCF2L-227ENST00000486806 MTMR7Q9Y216 660 aa11.16□□□□□ -0.62
MCF2L-227ENST00000486806 FRMPD2Q68DX3 1309 aaPredicted RBP11.15□□□□□ -0.62
MCF2L-227ENST00000486806 CNTNAP5Q8WYK1 1306 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 CCDC196A0A1B0GTZ2 297 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 RASSF10A6NK89 507 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 PLA2G6O60733 806 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 CTDNEP1O95476 244 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 GOLGA8HP0CJ92 632 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 ZNF157P51786 506 aaPredicted RBP11.15□□□□□ -0.62
MCF2L-227ENST00000486806 SNAPC2Q13487 334 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 BECN1Q14457 450 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 CCDC96Q2M329 555 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 FAM83BQ5T0W9 1011 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 BTNL9Q6UXG8 535 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 KCTD1Q719H9 257 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 NBPF11Q86T75 865 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 NSUN7Q8NE18 718 aaKnown RBP11.15□□□□□ -0.62
MCF2L-227ENST00000486806 SPZ1Q9BXG8 430 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 ABT1Q9ULW3 272 aaKnown RBP11.15□□□□□ -0.62
MCF2L-227ENST00000486806 PTPRFP10586 1907 aa11.15□□□□□ -0.62
MCF2L-227ENST00000486806 TESPA1A2RU30 521 aaPredicted RBP11.14□□□□□ -0.63
MCF2L-227ENST00000486806 KLRF2D3W0D1 207 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 CYTH3O43739 400 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 RAD21O60216 631 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 DHX16O60231 1041 aaKnown RBP11.14□□□□□ -0.63
MCF2L-227ENST00000486806 IFNAR1P17181 557 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 SMARCA1P28370 1054 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 GNAQP50148 359 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 GTF2A2P52657 109 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 TREML2Q5T2D2 321 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 SRBD1Q8N5C6 995 aaKnown RBP11.14□□□□□ -0.63
MCF2L-227ENST00000486806 SMARCC2Q8TAQ2 1214 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 CHMP4CQ96CF2 233 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 INTS4Q96HW7 963 aaKnown RBP11.14□□□□□ -0.63
MCF2L-227ENST00000486806 LZTS2Q9BRK4 669 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 LLPHQ9BRT6 129 aaKnown RBP11.14□□□□□ -0.63
MCF2L-227ENST00000486806 RPAP3Q9H6T3 665 aaPredicted RBP11.14□□□□□ -0.63
MCF2L-227ENST00000486806 TMOD4Q9NZQ9 345 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.14□□□□□ -0.63
MCF2L-227ENST00000486806 AGTPBP1Q9UPW5 1226 aa11.14□□□□□ -0.63
MCF2L-227ENST00000486806 STK36Q9NRP7 1315 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 PTPDC1A2A3K4 754 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 TMEM232C9JQI7 657 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 HOXA7P31268 230 aaPredicted RBP11.13□□□□□ -0.63
MCF2L-227ENST00000486806 STAT2P52630 851 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 MKRN3Q13064 507 aaKnown RBP11.13□□□□□ -0.63
MCF2L-227ENST00000486806 TTBK2Q6IQ55 1244 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 GPAT2Q6NUI2 795 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 FASTKD5Q7L8L6 764 aaKnown RBP11.13□□□□□ -0.63
MCF2L-227ENST00000486806 CMTR1Q8N1G2 835 aaKnown RBP11.13□□□□□ -0.63
MCF2L-227ENST00000486806 BRI3BPQ8WY22 251 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 CCDC102AQ96A19 550 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 MTMR8Q96EF0 704 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 CPVLQ9H3G5 476 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 RIOX1Q9H6W3 641 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 GPCPD1Q9NPB8 672 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 FBXO28Q9NVF7 368 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 FEM1BQ9UK73 627 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 THSD7BQ9C0I4 1608 aa11.13□□□□□ -0.63
MCF2L-227ENST00000486806 CPLX1O14810 134 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 JAK2O60674 1132 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 CDKL5O76039 1030 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 FMNL1O95466 1100 aaPredicted RBP11.12□□□□□ -0.63
MCF2L-227ENST00000486806 CETPP11597 493 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 SLC16A2P36021 539 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 SYDE2Q5VT97 1194 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 CPLX2Q6PUV4 134 aaKnown RBP11.12□□□□□ -0.63
MCF2L-227ENST00000486806 GADL1Q6ZQY3 521 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 CATSPERGQ6ZRH7 1159 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 FAM160B2Q86V87 743 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 PHKBQ93100 1093 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 RNF26Q9BY78 433 aaPredicted RBP11.12□□□□□ -0.63
MCF2L-227ENST00000486806 TANGO6Q9C0B7 1094 aa11.12□□□□□ -0.63
MCF2L-227ENST00000486806 UBA5Q9GZZ9 404 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms