RNA–Protein interactions for RNA: ENST00000486080.5

COL9A1-207, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 2

Gene COL9A1, Length 1,844 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-207ENST00000486080 KIF28PB7ZC32 967 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 CTNND1O60716 968 aaKnown RBP16.68■□□□□ 0.26
COL9A1-207ENST00000486080 ASNSP08243 561 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 TRIM29Q14134 588 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 PFKFB3Q16875 520 aaPredicted RBP16.68■□□□□ 0.26
COL9A1-207ENST00000486080 SPZ1Q9BXG8 430 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 ZNF341Q9BYN7 854 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 GLIS2Q9BZE0 524 aaPredicted RBP16.68■□□□□ 0.26
COL9A1-207ENST00000486080 ZSCAN16Q9H4T2 348 aaPredicted RBP16.68■□□□□ 0.26
COL9A1-207ENST00000486080 GDPD2Q9HCC8 539 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 ARHGEF10LQ9HCE6 1279 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 VAT1LQ9HCJ6 419 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 DOCK1Q14185 1865 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 NDUFB10O96000 172 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 SCG2P13521 617 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 KIF23Q02241 960 aaPredicted RBP16.68■□□□□ 0.26
COL9A1-207ENST00000486080 EAPPQ56P03 285 aaPredicted RBP16.68■□□□□ 0.26
COL9A1-207ENST00000486080 KIAA1755Q5JYT7 1200 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 KRT26Q7Z3Y9 468 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 SULF1Q8IWU6 871 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 RGS22Q8NE09 1264 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 GMCL1P1Q8NEA9 526 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 DCAF4Q8WV16 495 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 HOOK2Q96ED9 719 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 NUP88Q99567 741 aaPredicted RBP16.68■□□□□ 0.26
COL9A1-207ENST00000486080 ZNF112Q9UJU3 913 aa16.68■□□□□ 0.26
COL9A1-207ENST00000486080 DDX11L8A8MPP1 907 aa16.67■□□□□ 0.26
COL9A1-207ENST00000486080 NCLP19338 710 aaKnown RBP16.67■□□□□ 0.26
COL9A1-207ENST00000486080 SLC16A2P36021 539 aa16.67■□□□□ 0.26
COL9A1-207ENST00000486080 SLC1A4P43007 532 aa16.67■□□□□ 0.26
COL9A1-207ENST00000486080 PRKG1Q13976 671 aa16.67■□□□□ 0.26
COL9A1-207ENST00000486080 SPICE1Q8N0Z3 855 aa16.67■□□□□ 0.26
COL9A1-207ENST00000486080 GPKOWQ92917 476 aaPredicted RBP eCLIP16.67■□□□□ 0.26
COL9A1-207ENST00000486080 ZKSCAN4Q969J2 545 aaPredicted RBP16.67■□□□□ 0.26
COL9A1-207ENST00000486080 ISY1Q9ULR0 285 aaKnown RBP16.67■□□□□ 0.26
COL9A1-207ENST00000486080 TMX2Q9Y320 296 aa16.67■□□□□ 0.26
COL9A1-207ENST00000486080 IQCA1LA6NCM1 817 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 MMP1P03956 469 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 SMARCA1P28370 1054 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 SUPT20HL1Q3ZLR7 823 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 GPATCH4Q5T3I0 446 aaKnown RBP16.66■□□□□ 0.26
COL9A1-207ENST00000486080 USP48Q86UV5 1035 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 PIGSQ96S52 555 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 WRNIP1Q96S55 665 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 RIOX1Q9H6W3 641 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 TFIP11Q9UBB9 837 aaKnown RBP16.66■□□□□ 0.26
COL9A1-207ENST00000486080 GOLGA6L22H0YM25 854 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 PRPF40AO75400 957 aaKnown RBP16.66■□□□□ 0.26
COL9A1-207ENST00000486080 ZYXQ15942 572 aaKnown RBP16.66■□□□□ 0.26
COL9A1-207ENST00000486080 HOMER1Q86YM7 354 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 ZC3H15Q8WU90 426 aaKnown RBP16.66■□□□□ 0.26
COL9A1-207ENST00000486080 LMBRD1Q9NUN5 540 aa16.66■□□□□ 0.26
COL9A1-207ENST00000486080 RBM27Q9P2N5 1060 aaKnown RBP16.66■□□□□ 0.26
COL9A1-207ENST00000486080 BTBD18B2RXH4 712 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 WWC2Q6AWC2 1192 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 ADGRF4Q8IZF3 695 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 OXER1Q8TDS5 423 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 KLRG1Q96E93 195 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 RRP36Q96EU6 259 aaKnown RBP16.65■□□□□ 0.26
COL9A1-207ENST00000486080 GMCL1Q96IK5 515 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 PHF20Q9BVI0 1012 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 SYNPO2Q9UMS6 1093 aa16.65■□□□□ 0.26
COL9A1-207ENST00000486080 FIBPO43427 364 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 USP2O75604 605 aaPredicted RBP16.64■□□□□ 0.25
COL9A1-207ENST00000486080 POTEIP0CG38 1075 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 POTEJP0CG39 1038 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 XBP1P17861 261 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 TYW1BQ6NUM6 668 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 HEATR3Q7Z4Q2 680 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 DIS3L2Q8IYB7 885 aaKnown RBP16.64■□□□□ 0.25
COL9A1-207ENST00000486080 JMJD4Q9H9V9 463 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 GOPCQ9HD26 462 aa16.64■□□□□ 0.25
COL9A1-207ENST00000486080 USP17L10C9JJH3 530 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 BMP3P12645 472 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 U2AF2P26368 475 aaKnown RBP eCLIP16.63■□□□□ 0.25
COL9A1-207ENST00000486080 GNL2Q13823 731 aaKnown RBP16.63■□□□□ 0.25
COL9A1-207ENST00000486080 NPY5RQ15761 445 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 SCYL3Q8IZE3 742 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 FTOQ9C0B1 505 aaKnown RBP eCLIP16.63■□□□□ 0.25
COL9A1-207ENST00000486080 VCPKMTQ9H867 229 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 GINM1Q9NU53 330 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 PHIPQ8WWQ0 1821 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 ADAMTS3O15072 1205 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 KRT85P78386 507 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 NR5A1Q13285 461 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 SAFBQ15424 915 aaKnown RBP eCLIP16.63■□□□□ 0.25
COL9A1-207ENST00000486080 BRAPQ7Z569 592 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 PNMA8AQ86V59 439 aaPredicted RBP16.63■□□□□ 0.25
COL9A1-207ENST00000486080 CDCA5Q96FF9 252 aa16.63■□□□□ 0.25
COL9A1-207ENST00000486080 SEC63Q9UGP8 760 aaKnown RBP16.63■□□□□ 0.25
COL9A1-207ENST00000486080 OTOFQ9HC10 1997 aa16.62■□□□□ 0.25
COL9A1-207ENST00000486080 TMEM232C9JQI7 657 aa16.62■□□□□ 0.25
COL9A1-207ENST00000486080 STXBP3O00186 592 aa16.62■□□□□ 0.25
COL9A1-207ENST00000486080 PTPRAP18433 802 aa16.62■□□□□ 0.25
COL9A1-207ENST00000486080 CEBPZQ03701 1054 aaKnown RBP16.62■□□□□ 0.25
COL9A1-207ENST00000486080 FAM83BQ5T0W9 1011 aa16.62■□□□□ 0.25
COL9A1-207ENST00000486080 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.62■□□□□ 0.25
COL9A1-207ENST00000486080 FEZ1Q99689 392 aa16.62■□□□□ 0.25
COL9A1-207ENST00000486080 SH2D4AQ9H788 454 aa16.62■□□□□ 0.25
COL9A1-207ENST00000486080 RRAGCQ9HB90 399 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms