RNA–Protein interactions for RNA: ENST00000485567.1

FN1-222, Transcript of fibronectin 1, human

TSL 1 (best)

Gene FN1, Length 584 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FN1-222	ENST00000485567	LRP2BP	Q9P2M1	347 aa		5.85	□□□□□ -1.47
FN1-222	ENST00000485567	DIS3	Q9Y2L1	958 aa	Known RBP	5.85	□□□□□ -1.47
FN1-222	ENST00000485567	DYNC1LI2	O43237	492 aa	Predicted RBP	5.84	□□□□□ -1.47
FN1-222	ENST00000485567	EOMES	O95936	686 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	FGFR1	P11362	822 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	ITGA4	P13612	1032 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	RXRB	P28702	533 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	MASP1	P48740	699 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	PPP2R2A	P63151	447 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	DALRD3	Q5D0E6	543 aa	Known RBP	5.84	□□□□□ -1.47
FN1-222	ENST00000485567	FOXB2	Q5VYV0	432 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	POMZP3	Q6PJE2	187 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	ADAT2	Q7Z6V5	191 aa	Known RBP	5.84	□□□□□ -1.47
FN1-222	ENST00000485567	ZNF227	Q86WZ6	799 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	CLEC10A	Q8IUN9	316 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	5.84	□□□□□ -1.47
FN1-222	ENST00000485567	SYTL5	Q8TDW5	730 aa	Predicted RBP	5.84	□□□□□ -1.47
FN1-222	ENST00000485567	MRGPRX3	Q96LB0	322 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	FGD4	Q96M96	766 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	IPO9	Q96P70	1041 aa	Known RBP	5.84	□□□□□ -1.47
FN1-222	ENST00000485567	LGR6	Q9HBX8	967 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	APEX2	Q9UBZ4	518 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	NOP58	Q9Y2X3	529 aa	Known RBP	5.84	□□□□□ -1.47
FN1-222	ENST00000485567	EMC9	Q9Y3B6	208 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	PCDHB12	Q9Y5F1	795 aa		5.84	□□□□□ -1.47
FN1-222	ENST00000485567	DNAJC25-GNG10	A0A024R161	153 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	TRBV23-1	A0A0A0MS06	115 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	PLD2	O14939	933 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	DHX15	O43143	795 aa	Known RBP	5.83	□□□□□ -1.48
FN1-222	ENST00000485567	IGBP1	P78318	339 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	NFKBIB	Q15653	356 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	FNDC3B	Q53EP0	1204 aa	Known RBP	5.83	□□□□□ -1.48
FN1-222	ENST00000485567	FAM214B	Q7L5A3	538 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	TOP6BL	Q8N6T0	577 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	NINJ1	Q92982	152 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	EXOC2	Q96KP1	924 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	CDC6	Q99741	560 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	FAM83C	Q9BQN1	747 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	DUSP23	Q9BVJ7	150 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	SSBP4	Q9BWG4	385 aa	Predicted RBP	5.83	□□□□□ -1.48
FN1-222	ENST00000485567	FBXL21	Q9UKT6	434 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	AKT3	Q9Y243	479 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	SUGT1	Q9Y2Z0	365 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	CD2AP	Q9Y5K6	639 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	COL4A3BP	Q9Y5P4	624 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	FHOD1	Q9Y613	1164 aa		5.83	□□□□□ -1.48
FN1-222	ENST00000485567	hCG_2014768	A0A024R1R8	64 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	VIL1	P09327	827 aa	Known RBP	5.82	□□□□□ -1.48
FN1-222	ENST00000485567	KIR3DL1	P43629	444 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	ZNF445	P59923	1031 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	CDK5R2	Q13319	367 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	FAM209A	Q5JX71	171 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	NOL9	Q5SY16	702 aa	Known RBP	5.82	□□□□□ -1.48
FN1-222	ENST00000485567	BEND4	Q6ZU67	534 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	C22orf34	Q6ZV56	151 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	TRIM59	Q8IWR1	403 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	PPP1R14A	Q96A00	147 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	CCDC140	Q96MF4	163 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	PRDM14	Q9GZV8	571 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	PCDH12	Q9NPG4	1184 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	KCNH3	Q9ULD8	1083 aa		5.82	□□□□□ -1.48
FN1-222	ENST00000485567	TPX2	Q9ULW0	747 aa	Known RBP	5.82	□□□□□ -1.48
FN1-222	ENST00000485567	MRPS23	Q9Y3D9	190 aa	Known RBP	5.82	□□□□□ -1.48
FN1-222	ENST00000485567	IGF2BP3	O00425	579 aa	Known RBP eCLIP	5.81	□□□□□ -1.48	2e-14	■■□□□ 12.4
FN1-222	ENST00000485567	PABPC1	P11940	636 aa	Known RBP	5.81	□□□□□ -1.48
FN1-222	ENST00000485567	L1CAM	P32004	1257 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	SUMO1	P63165	101 aa	Known RBP	5.81	□□□□□ -1.48
FN1-222	ENST00000485567	GRB10	Q13322	594 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	TM4SF20	Q53R12	229 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	SFRP5	Q5T4F7	317 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	GPAT2	Q6NUI2	795 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	OGFOD3	Q6PK18	319 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	NSMF	Q6X4W1	530 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	KRT26	Q7Z3Y9	468 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	ENOX1	Q8TC92	643 aa	Known RBP	5.81	□□□□□ -1.48
FN1-222	ENST00000485567	OSBP2	Q969R2	916 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	MRPL4	Q9BYD3	311 aa	Known RBP	5.81	□□□□□ -1.48
FN1-222	ENST00000485567	KCNF1	Q9H3M0	494 aa		5.81	□□□□□ -1.48
FN1-222	ENST00000485567	NCOA5	Q9HCD5	579 aa	Known RBP	5.81	□□□□□ -1.48
FN1-222	ENST00000485567	CGGBP1	Q9UFW8	167 aa	Predicted RBP	5.81	□□□□□ -1.48
FN1-222	ENST00000485567	PRODH	O43272	600 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	KCNQ2	O43526	872 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	LRRN2	O75325	713 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	LEFTY1	O75610	366 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	ANAPC15	P60006	121 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	PABPC4	Q13310	644 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
FN1-222	ENST00000485567	YOD1	Q5VVQ6	348 aa	Predicted RBP	5.8	□□□□□ -1.48
FN1-222	ENST00000485567	NIM1K	Q8IY84	436 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	GATA6	Q92908	595 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	MFSD3	Q96ES6	412 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	PRDM5	Q9NQX1	630 aa	Predicted RBP	5.8	□□□□□ -1.48
FN1-222	ENST00000485567	GTF2IRD1	Q9UHL9	959 aa		5.8	□□□□□ -1.48
FN1-222	ENST00000485567	CNTNAP4	Q9C0A0	1308 aa		5.79	□□□□□ -1.48
FN1-222	ENST00000485567	SIGLEC6	O43699	453 aa		5.79	□□□□□ -1.48
FN1-222	ENST00000485567	FAM87A	P0C7U9	286 aa		5.79	□□□□□ -1.48
FN1-222	ENST00000485567	ZNF865	P0CJ78	1059 aa	Predicted RBP	5.79	□□□□□ -1.48
FN1-222	ENST00000485567	HOXC12	P31275	282 aa		5.79	□□□□□ -1.48
FN1-222	ENST00000485567	MAP4K2	Q12851	820 aa		5.79	□□□□□ -1.48
FN1-222	ENST00000485567	CYP27C1	Q4G0S4	372 aa		5.79	□□□□□ -1.48
FN1-222	ENST00000485567	GTF2IRD2B	Q6EKJ0	949 aa		5.79	□□□□□ -1.48

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