RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 SDR42E1Q8WUS8 393 aa6.3□□□□□ -1.4
COL17A1-206ENST00000483876 SYAP1Q96A49 352 aaPredicted RBP6.3□□□□□ -1.4
COL17A1-206ENST00000483876 ZSCAN10Q96SZ4 725 aaPredicted RBP6.3□□□□□ -1.4
COL17A1-206ENST00000483876 MAP3K14Q99558 947 aa6.3□□□□□ -1.4
COL17A1-206ENST00000483876 UBAC1Q9BSL1 405 aa6.3□□□□□ -1.4
COL17A1-206ENST00000483876 C11orf16Q9NQ32 467 aa6.3□□□□□ -1.4
COL17A1-206ENST00000483876 AATFQ9NY61 560 aaKnown RBP eCLIP6.3□□□□□ -1.4
COL17A1-206ENST00000483876 TACC3Q9Y6A5 838 aa6.3□□□□□ -1.4
COL17A1-206ENST00000483876 POLR2AP24928 1970 aaKnown RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 NEDD4P46934 1319 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 STK36Q9NRP7 1315 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 SSC5DA1L4H1 1573 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 TESPA1A2RU30 521 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 VPS37CA5D8V6 355 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 GOLGA8BA8MQT2 603 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 H3BQV1 296 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 JAK2O60674 1132 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 HOXD10P28358 340 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 MMP14P50281 582 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 METAP2P50579 478 aaKnown RBP eCLIP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 RHBDL3P58872 404 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 ZNF445P59923 1031 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 NFXL1Q6ZNB6 911 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 BRAPQ7Z569 592 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 FAM177A1Q8N128 213 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 FANCBQ8NB91 859 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 DIS3LQ8TF46 1054 aaKnown RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 ZNF396Q96N95 335 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 DEFB118Q96PH6 123 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 DBNDD1Q9H9R9 158 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 GPHNQ9NQX3 736 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 FAM217BQ9NTX9 383 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 MCM9Q9NXL9 1143 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 ORC3Q9UBD5 711 aaPredicted RBP6.29□□□□□ -1.4
COL17A1-206ENST00000483876 SRRDQ9UH36 339 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 RCOR1Q9UKL0 485 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 LAMA4Q16363 1823 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 ROBO3Q96MS0 1386 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 CACNA1GO43497 2377 aa6.29□□□□□ -1.4
COL17A1-206ENST00000483876 GOLGA6L3A6NEY3 463 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 G3V3G9 751 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 RIMBP2O15034 1052 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 DDAH1O94760 285 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 FMNL1O95466 1100 aaPredicted RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 ADD1P35611 737 aaKnown RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 BTDP43251 543 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 USP5P45974 858 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 ZNF280AP59817 542 aaPredicted RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 GTF2IP78347 998 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 DNM1Q05193 864 aaKnown RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 TROAPQ12815 778 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 RESTQ13127 1097 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 KCTD2Q14681 263 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 DCAF8Q5TAQ9 597 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 CATIPQ7Z7H3 387 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 TTC6Q86TZ1 520 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 TRIM22Q8IYM9 498 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 CRACR2BQ8N4Y2 399 aaPredicted RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 GPT2Q8TD30 523 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 SH3RF3Q8TEJ3 882 aaPredicted RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 DDX11Q96FC9 970 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 CLMNQ96JQ2 1002 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 C8orf76Q96K31 380 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 NCOA5Q9HCD5 579 aaKnown RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 MYOZ2Q9NPC6 264 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 INCENPQ9NQS7 918 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 KCNQ5Q9NR82 932 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 RBM28Q9NW13 759 aaKnown RBP6.28□□□□□ -1.4
COL17A1-206ENST00000483876 FZD1Q9UP38 647 aa6.28□□□□□ -1.4
COL17A1-206ENST00000483876 TNKSO95271 1327 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 MYO3BQ8WXR4 1341 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 CDH23Q9H251 3354 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 USP17L3A6NCW0 530 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 USP17L4A6NCW7 530 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 GOLGA8AA7E2F4 631 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 PRPF3O43395 683 aaKnown RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 RANBP6O60518 1105 aaKnown RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 WDHD1O75717 1129 aaPredicted RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 RGS20O76081 388 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 DEXIO95424 95 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 POLR3DP05423 398 aaPredicted RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 BMP1P13497 986 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 U2AF2P26368 475 aaKnown RBP eCLIP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 SMARCA1P28370 1054 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 CDC27P30260 824 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 NOVP48745 357 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 SMAD3P84022 425 aaKnown RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 SSRP1Q08945 709 aaKnown RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 GRIN2CQ14957 1233 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 DIXDC1Q155Q3 683 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 GRIK5Q16478 980 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 RTN1Q16799 776 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 RRP12Q5JTH9 1297 aaKnown RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 PPP4R3BQ5MIZ7 849 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 IFIT1BQ5T764 474 aaKnown RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 FOXD4L5Q5VV16 416 aaPredicted RBP6.27□□□□□ -1.41
COL17A1-206ENST00000483876 USP17L1Q7RTZ2 530 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 TEX11Q8IYF3 940 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 ZNF654Q8IZM8 581 aa6.27□□□□□ -1.41
COL17A1-206ENST00000483876 ZNF444Q8N0Y2 327 aaPredicted RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms