RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 ZNF543Q08ER8 600 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 PKN1Q16512 942 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 LCE2DQ5TA82 110 aaPredicted RBP9.59□□□□□ -0.87
USP4-210ENST00000483212 DCAF4Q8WV16 495 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 SHISA4Q96DD7 197 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 WDR18Q9BV38 432 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 SPZ1Q9BXG8 430 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 RNF26Q9BY78 433 aaPredicted RBP9.59□□□□□ -0.87
USP4-210ENST00000483212 ARHGEF10LQ9HCE6 1279 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 ORC3Q9UBD5 711 aaPredicted RBP9.59□□□□□ -0.87
USP4-210ENST00000483212 MTMR6Q9Y217 621 aa9.59□□□□□ -0.87
USP4-210ENST00000483212 FRMPD2Q68DX3 1309 aaPredicted RBP9.58□□□□□ -0.88
USP4-210ENST00000483212 KLRF2D3W0D1 207 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 POTEB2H3BUK9 544 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 PRPF3O43395 683 aaKnown RBP9.58□□□□□ -0.88
USP4-210ENST00000483212 PARP1P09874 1014 aaKnown RBP9.58□□□□□ -0.88
USP4-210ENST00000483212 GNAQP50148 359 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 MAP3K9P80192 1104 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 ATP2B2Q01814 1243 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 PRKG1Q13976 671 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 VGLL4Q14135 290 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 ASPRV1Q53RT3 343 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 LDLRAD1Q5T700 205 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 SLFN13Q68D06 897 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 CPLX2Q6PUV4 134 aaKnown RBP9.58□□□□□ -0.88
USP4-210ENST00000483212 MOB2Q70IA6 237 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 RGS22Q8NE09 1264 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 ZNF526Q8TF50 670 aaPredicted RBP9.58□□□□□ -0.88
USP4-210ENST00000483212 AIFM3Q96NN9 605 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 SLC26A6Q9BXS9 759 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 KIAA1683Q9H0B3 1180 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 CPVLQ9H3G5 476 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 RIOX1Q9H6W3 641 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 VCPKMTQ9H867 229 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 CLEC11AQ9Y240 323 aa9.58□□□□□ -0.88
USP4-210ENST00000483212 STX6O43752 255 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 PPP1R12BO60237 982 aaPredicted RBP9.57□□□□□ -0.88
USP4-210ENST00000483212 DEXIO95424 95 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 ITGBL1O95965 494 aaPredicted RBP9.57□□□□□ -0.88
USP4-210ENST00000483212 NUCB2P80303 420 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 SSRP1Q08945 709 aaKnown RBP9.57□□□□□ -0.88
USP4-210ENST00000483212 GPATCH4Q5T3I0 446 aaKnown RBP9.57□□□□□ -0.88
USP4-210ENST00000483212 TTBK2Q6IQ55 1244 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 CCDC82Q8N4S0 544 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 MTMR8Q96EF0 704 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 NUP88Q99567 741 aaPredicted RBP9.57□□□□□ -0.88
USP4-210ENST00000483212 LZTS2Q9BRK4 669 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 SH2D4AQ9H788 454 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 GJB4Q9NTQ9 266 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 MTMR7Q9Y216 660 aa9.57□□□□□ -0.88
USP4-210ENST00000483212 hCG_1642624A0A1W2PR95 340 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 SPDYE5A6NIY4 337 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 KIF3CO14782 793 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 PDCP20941 246 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 NF2P35240 595 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 SLC1A4P43007 532 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 IREB2P48200 963 aaKnown RBP9.56□□□□□ -0.88
USP4-210ENST00000483212 DGKZQ13574 1117 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 PFKFB3Q16875 520 aaPredicted RBP9.56□□□□□ -0.88
USP4-210ENST00000483212 LARP1BQ659C4 914 aaKnown RBP9.56□□□□□ -0.88
USP4-210ENST00000483212 CHADLQ6NUI6 762 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 BTNL9Q6UXG8 535 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 KCTD1Q719H9 257 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 TRIM22Q8IYM9 498 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 ANKRD13AQ8IZ07 590 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 FAM184AQ8NB25 1140 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 ZNF280CQ8ND82 737 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 CLMNQ96JQ2 1002 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 C12orf42Q96LP6 360 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 ALG1Q9BT22 464 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 UBA5Q9GZZ9 404 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 GPCPD1Q9NPB8 672 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 PICK1Q9NRD5 415 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 EMILIN3Q9NT22 766 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 AFG3L2Q9Y4W6 797 aa9.56□□□□□ -0.88
USP4-210ENST00000483212 V9GY48 417 aaPredicted RBP9.56□□□□□ -0.88
USP4-210ENST00000483212 WDR33Q9C0J8 1336 aaKnown RBP9.56□□□□□ -0.88
USP4-210ENST00000483212 UNCXA6NJT0 531 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 USP17L10C9JJH3 530 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 PLA2G6O60733 806 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 F13A1P00488 732 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 ZSCAN22P10073 491 aaPredicted RBP9.55□□□□□ -0.88
USP4-210ENST00000483212 BMP3P12645 472 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 PDIA4P13667 645 aaKnown RBP9.55□□□□□ -0.88
USP4-210ENST00000483212 SLC16A2P36021 539 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 BACE1P56817 501 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 FKBP1BP68106 108 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 SPP2Q13103 211 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 RESTQ13127 1097 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 MTMR2Q13614 643 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 NPY5RQ15761 445 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 ZYXQ15942 572 aaKnown RBP9.55□□□□□ -0.88
USP4-210ENST00000483212 CCDC96Q2M329 555 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 SH3D19Q5HYK7 790 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 FAM83BQ5T0W9 1011 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 OTUD7BQ6GQQ9 843 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 TYW1BQ6NUM6 668 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 CLEC17AQ6ZS10 378 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 ADGRF4Q8IZF3 695 aa9.55□□□□□ -0.88
USP4-210ENST00000483212 SPICE1Q8N0Z3 855 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms