RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MAP3K14Q99558 947 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 NUP88Q99567 741 aaPredicted RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 SLKQ9H2G2 1235 aaPredicted RBP14.28□□□□□ -0.12
SDC1-206ENST00000482879 HPS5Q9UPZ3 1129 aa14.28□□□□□ -0.12
SDC1-206ENST00000482879 FRMPD2Q68DX3 1309 aaPredicted RBP14.27□□□□□ -0.12
SDC1-206ENST00000482879 FAM155AB1AL88 458 aaPredicted RBP14.27□□□□□ -0.13
SDC1-206ENST00000482879 SNHG28P0DPA3 235 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 CETPP11597 493 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 BMP3P12645 472 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 VCAM1P19320 739 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 KIF5BP33176 963 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 METAP2P50579 478 aaKnown RBP eCLIP14.27□□□□□ -0.13
SDC1-206ENST00000482879 RCAN1P53805 252 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 ZNF543Q08ER8 600 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 RTN1Q16799 776 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 FAM83BQ5T0W9 1011 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 KCTD1Q719H9 257 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 PROCA1Q8NCQ7 364 aaPredicted RBP14.27□□□□□ -0.13
SDC1-206ENST00000482879 MS4A4AQ96JQ5 239 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 GPCPD1Q9NPB8 672 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 LOC285556D6RIA3 1793 aa14.27□□□□□ -0.13
SDC1-206ENST00000482879 MYH6P13533 1939 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 CCL15-CCL14A0A0B4J2E2 113 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 PALM3A6NDB9 673 aaPredicted RBP14.26□□□□□ -0.13
SDC1-206ENST00000482879 WDR46O15213 610 aaKnown RBP14.26□□□□□ -0.13
SDC1-206ENST00000482879 PFKFB2O60825 505 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 LARGE1O95461 756 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 GOLGA8HP0CJ92 632 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 HTRA3P83110 453 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 CCL15Q16663 113 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 ASPRV1Q53RT3 343 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 HSCBQ8IWL3 235 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 STAG2Q8N3U4 1231 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 NECAB1Q8N987 351 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 TMX3Q96JJ7 454 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 CAPNS2Q96L46 248 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 RPAP3Q9H6T3 665 aaPredicted RBP14.26□□□□□ -0.13
SDC1-206ENST00000482879 SH2B1Q9NRF2 756 aaPredicted RBP14.26□□□□□ -0.13
SDC1-206ENST00000482879 RBM28Q9NW13 759 aaKnown RBP14.26□□□□□ -0.13
SDC1-206ENST00000482879 MAD2L2Q9UI95 211 aa14.26□□□□□ -0.13
SDC1-206ENST00000482879 CCDC196A0A1B0GTZ2 297 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 MANSC4A6NHS7 340 aaPredicted RBP14.25□□□□□ -0.13
SDC1-206ENST00000482879 TMEM232C9JQI7 657 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 CDC27P30260 824 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 ADD1P35611 737 aaKnown RBP14.25□□□□□ -0.13
SDC1-206ENST00000482879 GNAQP50148 359 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 SCRN1Q12765 414 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 IKQ13123 557 aaPredicted RBP14.25□□□□□ -0.13
SDC1-206ENST00000482879 MOGSQ13724 837 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 PPP2R5BQ15173 497 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 TREML2Q5T2D2 321 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 GPATCH4Q5T3I0 446 aaKnown RBP14.25□□□□□ -0.13
SDC1-206ENST00000482879 TTBK2Q6IQ55 1244 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 BRI3BPQ8WY22 251 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 TANGO6Q9C0B7 1094 aa14.25□□□□□ -0.13
SDC1-206ENST00000482879 NCOA5Q9HCD5 579 aaKnown RBP14.25□□□□□ -0.13
SDC1-206ENST00000482879 FAM217BQ9NTX9 383 aaPredicted RBP14.25□□□□□ -0.13
SDC1-206ENST00000482879 RBM19Q9Y4C8 960 aaKnown RBP14.25□□□□□ -0.13
SDC1-206ENST00000482879 USP17L15C9J2P7 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L13C9JLJ4 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L11C9JVI0 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 KLRF2D3W0D1 207 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L18D6R9N7 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L22D6RA61 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L17D6RBQ6 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L19D6RCP7 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L20D6RJB6 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 K7ELQ4 463 aaPredicted RBP14.24□□□□□ -0.13
SDC1-206ENST00000482879 HSPA6P17066 643 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 USP17L24Q0WX57 530 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 GPAT2Q6NUI2 795 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 CATSPERGQ6ZRH7 1159 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 CCDC83Q8IWF9 413 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 CHURC1Q8WUH1 139 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 LZTS2Q9BRK4 669 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 UBA5Q9GZZ9 404 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 FEM1BQ9UK73 627 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 AGTPBP1Q9UPW5 1226 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 PARP14Q460N5 1801 aa14.24□□□□□ -0.13
SDC1-206ENST00000482879 NID2Q14112 1375 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 TESPA1A2RU30 521 aaPredicted RBP14.23□□□□□ -0.13
SDC1-206ENST00000482879 BTBD19C9JJ37 291 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 CPLX1O14810 134 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 DHX16O60231 1041 aaKnown RBP14.23□□□□□ -0.13
SDC1-206ENST00000482879 AOC2O75106 756 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 FLOT1O75955 427 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 PLEKHA8P1O95397 391 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 HOXA7P31268 230 aaPredicted RBP14.23□□□□□ -0.13
SDC1-206ENST00000482879 SLC16A2P36021 539 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 ANP32AP39687 249 aaKnown RBP14.23□□□□□ -0.13
SDC1-206ENST00000482879 STAT2P52630 851 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 INHBEP58166 350 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 KIF23Q02241 960 aaPredicted RBP14.23□□□□□ -0.13
SDC1-206ENST00000482879 NOGQ13253 232 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 PABPC4Q13310 644 aaKnown RBP eCLIP14.23□□□□□ -0.13
SDC1-206ENST00000482879 CPLX2Q6PUV4 134 aaKnown RBP14.23□□□□□ -0.13
SDC1-206ENST00000482879 SAMD1Q6SPF0 538 aaPredicted RBP14.23□□□□□ -0.13
SDC1-206ENST00000482879 TMTC3Q6ZXV5 915 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 FAM160B2Q86V87 743 aa14.23□□□□□ -0.13
SDC1-206ENST00000482879 CMTR1Q8N1G2 835 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms