RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 PNPLA7Q6ZV29 1317 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 PTPREP23469 700 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 VEZTQ9HBM0 779 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 C3P01024 1663 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 SHTN1A0MZ66 631 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 PPP4R3AQ6IN85 833 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 DYMQ7RTS9 669 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 ZNF34Q8IZ26 560 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 TEKT1Q969V4 418 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 IQCDQ96DY2 449 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 PPP1R13BQ96KQ4 1090 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 CETN2P41208 172 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 BPIFA3Q9BQP9 254 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 SRP68Q9UHB9 627 aaKnown RBP16.36■□□□□ 0.21
HDAC6-220ENST00000477528 STK24Q9Y6E0 443 aa16.36■□□□□ 0.21
HDAC6-220ENST00000477528 MACROD2A1Z1Q3 448 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 RPS6KA4O75676 772 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 TRMT1LQ7Z2T5 733 aaKnown RBP16.35■□□□□ 0.21
HDAC6-220ENST00000477528 SMAP1Q8IYB5 467 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-220ENST00000477528 JAKMIP2Q96AA8 810 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 SLF1Q9BQI6 1058 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 CCDC84Q86UT8 332 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-220ENST00000477528 MAGEF1Q9HAY2 307 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 FAM196AQ6ZSG2 479 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 OR8K1Q8NGG5 319 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.35■□□□□ 0.21
HDAC6-220ENST00000477528 GRAMD1CQ8IYS0 662 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 SELENOOQ9BVL4 669 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 SH2D4AQ9H788 454 aa16.35■□□□□ 0.21
HDAC6-220ENST00000477528 UBN2Q6ZU65 1347 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 TECP42680 631 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 ZNF579Q8NAF0 562 aaKnown RBP16.34■□□□□ 0.21
HDAC6-220ENST00000477528 LMBR1Q8WVP7 490 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 DESI2Q9BSY9 194 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 NT5C3AQ9H0P0 336 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 NARFQ9UHQ1 456 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 ZHX1Q9UKY1 873 aaPredicted RBP16.34■□□□□ 0.21
HDAC6-220ENST00000477528 RBM26Q5T8P6 1007 aaKnown RBP16.34■□□□□ 0.21
HDAC6-220ENST00000477528 TMTC3Q6ZXV5 915 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 ZMYND15Q9H091 742 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 CETN3O15182 167 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 USP17L8P0C7I0 530 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 DNM2P50570 870 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 PRPF4BQ13523 1007 aaKnown RBP16.34■□□□□ 0.21
HDAC6-220ENST00000477528 HDXQ7Z353 690 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 VSTM4Q8IW00 320 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 CUEDC2Q9H467 287 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 ARHGEF10LQ9HCE6 1279 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 KNDC1Q76NI1 1749 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 PLEKHA8P1O95397 391 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 GRAPQ13588 217 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 DGKHQ86XP1 1220 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 GRAPLQ8TC17 118 aaPredicted RBP16.34■□□□□ 0.21
HDAC6-220ENST00000477528 MST1RQ04912 1400 aa16.34■□□□□ 0.21
HDAC6-220ENST00000477528 BBOX1O75936 387 aa16.33■□□□□ 0.21
HDAC6-220ENST00000477528 SSR1P43307 286 aaKnown RBP16.33■□□□□ 0.21
HDAC6-220ENST00000477528 HERC4Q5GLZ8 1057 aaPredicted RBP16.33■□□□□ 0.21
HDAC6-220ENST00000477528 HSF2BPO75031 334 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 WDHD1O75717 1129 aaPredicted RBP16.33■□□□□ 0.2
HDAC6-220ENST00000477528 FRMPD2Q68DX3 1309 aaPredicted RBP16.33■□□□□ 0.2
HDAC6-220ENST00000477528 KIF28PB7ZC32 967 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 VWA3BQ502W6 1294 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 USP37Q86T82 979 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 H0YIN7 160 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 IFFO1Q0D2I5 559 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 CCDC174Q6PII3 467 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 LRRC47Q8N1G4 583 aaKnown RBP16.33■□□□□ 0.2
HDAC6-220ENST00000477528 AK8Q96MA6 479 aa16.33■□□□□ 0.2
HDAC6-220ENST00000477528 ATP1A3P13637 1013 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 PDE6BP35913 854 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 TCP10Q12799 353 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 TMC4Q7Z404 712 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 COPB1P53618 953 aaKnown RBP16.32■□□□□ 0.2
HDAC6-220ENST00000477528 ENAHQ8N8S7 591 aaPredicted RBP16.32■□□□□ 0.2
HDAC6-220ENST00000477528 RASGRP4Q8TDF6 673 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 CELF1Q92879 486 aaKnown RBP16.32■□□□□ 0.2
HDAC6-220ENST00000477528 SPTLC3Q9NUV7 552 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 KDM3AQ9Y4C1 1321 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 SERPINB2P05120 415 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 RAPGEF1Q13905 1077 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 ERCC6LQ2NKX8 1250 aa16.32■□□□□ 0.2
HDAC6-220ENST00000477528 SECISBP2LQ93073 1101 aaKnown RBP16.32■□□□□ 0.2
HDAC6-220ENST00000477528 EPB41P11171 864 aaKnown RBP16.31■□□□□ 0.2
HDAC6-220ENST00000477528 EPSTI1Q96J88 318 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 CTDNEP1O95476 244 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 DCAF17Q5H9S7 520 aaPredicted RBP16.31■□□□□ 0.2
HDAC6-220ENST00000477528 NCAPH2Q6IBW4 605 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 PAGE5Q96GU1 130 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 PSTPIP2Q9H939 334 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 DNM3Q9UQ16 869 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.31■□□□□ 0.2
HDAC6-220ENST00000477528 ANTXR2P58335 489 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 ARL6IP4Q66PJ3 421 aaKnown RBP16.31■□□□□ 0.2
HDAC6-220ENST00000477528 DYNLL2Q96FJ2 89 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 MYL1P05976 194 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 DIXDC1Q155Q3 683 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 ASPRV1Q53RT3 343 aa16.31■□□□□ 0.2
HDAC6-220ENST00000477528 GPR161Q8N6U8 529 aaKnown RBP16.31■□□□□ 0.2
HDAC6-220ENST00000477528 GOLGA6L10A0A0M3HER8 536 aa16.3■□□□□ 0.2
HDAC6-220ENST00000477528 SLC9C1Q4G0N8 1177 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms