RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 GMCL1P1Q8NEA9 526 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 GPRC5AQ8NFJ5 357 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 PORCNQ9H237 461 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 MTMR7Q9Y216 660 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 PTCH2Q9Y6C5 1203 aa11.44□□□□□ -0.58
HDAC3-208ENST00000476739 COL11A1P12107 1806 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-208ENST00000476739 TNPO2O14787 897 aaKnown RBP11.43□□□□□ -0.58
HDAC3-208ENST00000476739 MCCP23508 829 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 FCGRTP55899 365 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 PRKCZQ05513 592 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 PKN2Q16513 984 aaKnown RBP11.43□□□□□ -0.58
HDAC3-208ENST00000476739 CHST3Q7LGC8 479 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 HOXC10Q9NYD6 342 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 SRRDQ9UH36 339 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 PPP1R9AQ9ULJ8 1098 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 SYNPO2Q9UMS6 1093 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 ADAMTS5Q9UNA0 930 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 HPS5Q9UPZ3 1129 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 RABGAP1Q9Y3P9 1069 aa11.43□□□□□ -0.58
HDAC3-208ENST00000476739 PLXNB2O15031 1838 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 SLC27A2O14975 620 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 TOP1P11387 765 aaKnown RBP11.42□□□□□ -0.58
HDAC3-208ENST00000476739 BMP3P12645 472 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 TMEM132BQ14DG7 1078 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 CREB3L3Q68CJ9 461 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 KCTD1Q719H9 257 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 ENAHQ8N8S7 591 aaPredicted RBP11.42□□□□□ -0.58
HDAC3-208ENST00000476739 REPS2Q8NFH8 660 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 GTF3C2Q8WUA4 911 aaPredicted RBP11.42□□□□□ -0.58
HDAC3-208ENST00000476739 ZSCAN10Q96SZ4 725 aaPredicted RBP11.42□□□□□ -0.58
HDAC3-208ENST00000476739 SLF1Q9BQI6 1058 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 KRT23Q9C075 422 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 SENP2Q9HC62 589 aa11.42□□□□□ -0.58
HDAC3-208ENST00000476739 TNKSO95271 1327 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 FRMPD2Q68DX3 1309 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-208ENST00000476739 MYPNQ86TC9 1320 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 TMEM232C9JQI7 657 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 VWA5AO00534 786 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 GNRH1P01148 92 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 SLC1A4P43007 532 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 FLT3LGP49771 235 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 ANTXR2P58335 489 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 SEC23AQ15436 765 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 PPP4R3BQ5MIZ7 849 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 TTBK2Q6IQ55 1244 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 CASC1Q6TDU7 716 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 DGKHQ86XP1 1220 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 MB21D2Q8IYB1 491 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-208ENST00000476739 RASEFQ8IZ41 740 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 ANKS1AQ92625 1134 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 KIFC2Q96AC6 838 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 GMCL1Q96IK5 515 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 TTC14Q96N46 770 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 MOV10L1Q9BXT6 1211 aaKnown RBP11.41□□□□□ -0.58
HDAC3-208ENST00000476739 CNNM2Q9H8M5 875 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 GJD2Q9UKL4 321 aa11.41□□□□□ -0.58
HDAC3-208ENST00000476739 CAPN15O75808 1086 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 PDHBP11177 359 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 SNAP25P60880 206 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 PLS1Q14651 629 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 ARHGEF6Q15052 776 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 GPR142Q7Z601 462 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 IQCA1Q86XH1 822 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 NCOA7Q8NI08 942 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 SH3TC2Q8TF17 1288 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 SPATC1LQ9H0A9 340 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 FEM1BQ9UK73 627 aa11.4□□□□□ -0.58
HDAC3-208ENST00000476739 ZNF214Q9UL59 606 aaPredicted RBP11.4□□□□□ -0.58
HDAC3-208ENST00000476739 ISY1Q9ULR0 285 aaKnown RBP11.4□□□□□ -0.58
HDAC3-208ENST00000476739 CCDC85CA6NKD9 419 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 ERCC3P19447 782 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 HOXD10P28358 340 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 MAPK4P31152 587 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 SLC16A2P36021 539 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 NT5C2P49902 561 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 STAT2P52630 851 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 TRDNQ13061 729 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 CCDC96Q2M329 555 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 ADCK5Q3MIX3 580 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 WDR78Q5VTH9 848 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 PLEKHH3Q7Z736 793 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 RALYLQ86SE5 291 aaKnown RBP11.39□□□□□ -0.59
HDAC3-208ENST00000476739 MB21D1Q8N884 522 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 PRPF38AQ8NAV1 312 aaKnown RBP11.39□□□□□ -0.59
HDAC3-208ENST00000476739 PNMA1Q8ND90 353 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 RAET1EQ8TD07 263 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 DCAF4Q8WV16 495 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 COA7Q96BR5 231 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 UBAC1Q9BSL1 405 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 CPVLQ9H3G5 476 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 GPCPD1Q9NPB8 672 aa11.39□□□□□ -0.59
HDAC3-208ENST00000476739 GPHNQ9NQX3 736 aaPredicted RBP11.39□□□□□ -0.59
HDAC3-208ENST00000476739 HTTP42858 3142 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 MYCP01106 439 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-208ENST00000476739 GOLGA8HP0CJ92 632 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 SNHG28P0DPA3 235 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 ELNP15502 786 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 TAL1P17542 331 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-208ENST00000476739 CYP2B6P20813 491 aa11.38□□□□□ -0.59
HDAC3-208ENST00000476739 PRMT2P55345 433 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms