RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 ICA1Q05084 483 aa14.5□□□□□ -0.09
HDAC6-219ENST00000476625 TMEM179Q6ZVK1 233 aa14.5□□□□□ -0.09
HDAC6-219ENST00000476625 STK11IPQ8N1F8 1099 aa14.5□□□□□ -0.09
HDAC6-219ENST00000476625 SHCBP1Q8NEM2 672 aa14.5□□□□□ -0.09
HDAC6-219ENST00000476625 NUP88Q99567 741 aaPredicted RBP14.5□□□□□ -0.09
HDAC6-219ENST00000476625 VCPKMTQ9H867 229 aa14.5□□□□□ -0.09
HDAC6-219ENST00000476625 MYADML2A6NDP7 307 aa14.49□□□□□ -0.09
HDAC6-219ENST00000476625 CCER2I3L3R5 266 aa14.49□□□□□ -0.09
HDAC6-219ENST00000476625 PQBP1O60828 265 aaKnown RBP14.49□□□□□ -0.09
HDAC6-219ENST00000476625 EEF2P13639 858 aaKnown RBP14.49□□□□□ -0.09
HDAC6-219ENST00000476625 MMP19Q99542 508 aa14.49□□□□□ -0.09
HDAC6-219ENST00000476625 XPNPEP3Q9NQH7 507 aa14.49□□□□□ -0.09
HDAC6-219ENST00000476625 PRDM6Q9NQX0 595 aa14.49□□□□□ -0.09
HDAC6-219ENST00000476625 HOXC10Q9NYD6 342 aa14.49□□□□□ -0.09
HDAC6-219ENST00000476625 A0A1W2PQ45 241 aaPredicted RBP14.48□□□□□ -0.09
HDAC6-219ENST00000476625 A0A1W2PQY0 241 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 STRNO43815 780 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 RAD21O60216 631 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 ZNF865P0CJ78 1059 aaPredicted RBP14.48□□□□□ -0.09
HDAC6-219ENST00000476625 FOSL2P15408 326 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 CDK8P49336 464 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 CERS3Q8IU89 383 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 SIRT2Q8IXJ6 389 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 BOLA2Q9H3K6 86 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 MROH8Q9H579 483 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 PHF24Q9UPV7 400 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 TMX2Q9Y320 296 aa14.48□□□□□ -0.09
HDAC6-219ENST00000476625 LRRC37A2A6NM11 1700 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 ADCY6O43306 1168 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 CLTBP09497 229 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 FCER1AP12319 257 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 GRIN2CQ14957 1233 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 FAM83BQ5T0W9 1011 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 REPS2Q8NFH8 660 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 RNPC3Q96LT9 517 aaKnown RBP14.47□□□□□ -0.09
HDAC6-219ENST00000476625 ARHGEF10LQ9HCE6 1279 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 RIPK3Q9Y572 518 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 VCANP13611 3396 aa14.47□□□□□ -0.09
HDAC6-219ENST00000476625 USP17L12C9JPN9 530 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 USP17L21D6R901 530 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 WDR46O15213 610 aaKnown RBP14.46□□□□□ -0.09
HDAC6-219ENST00000476625 IGSF3O75054 1194 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 ADAMTS4O75173 837 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 PTGS1P23219 599 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 ADD2P35612 726 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 SLC4A3P48751 1232 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 SMAD3P84022 425 aaKnown RBP14.46□□□□□ -0.09
HDAC6-219ENST00000476625 ZNF792Q3KQV3 632 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 C12orf60Q5U649 245 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 TINF2Q9BSI4 451 aa14.46□□□□□ -0.09
HDAC6-219ENST00000476625 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.46□□□□□ -0.09
HDAC6-219ENST00000476625 ZNF214Q9UL59 606 aaPredicted RBP14.46□□□□□ -0.09
HDAC6-219ENST00000476625 PRUNE2Q8WUY3 3088 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 SYNRGQ9UMZ2 1314 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 CUL9Q8IWT3 2517 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 GRXCR1A8MXD5 290 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 RARBP10826 455 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 HNRNPUQ00839 825 aaKnown RBP eCLIP14.45□□□□□ -0.1
HDAC6-219ENST00000476625 FAAP100Q0VG06 881 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 TTF1Q15361 905 aaPredicted RBP14.45□□□□□ -0.1
HDAC6-219ENST00000476625 ERC1Q8IUD2 1116 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 RIOX2Q8IUF8 465 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 ABRAQ8N0Z2 381 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 MB21D1Q8N884 522 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 PAG1Q9NWQ8 432 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 SWAP70Q9UH65 585 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 RAPGEFL1Q9UHV5 662 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 ADAMTS5Q9UNA0 930 aa14.45□□□□□ -0.1
HDAC6-219ENST00000476625 DDX49Q9Y6V7 483 aaKnown RBP14.45□□□□□ -0.1
HDAC6-219ENST00000476625 RBAK-RBAKDNI3L0D1 243 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 VWA5AO00534 786 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 KIAA0355O15063 1070 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 IFIT2P09913 472 aaKnown RBP14.44□□□□□ -0.1
HDAC6-219ENST00000476625 RAG1P15918 1043 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 PBX2P40425 430 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 C1orf53Q5VUE5 145 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 CTR9Q6PD62 1173 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 C16orf86Q6ZW13 317 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 CHMP4CQ96CF2 233 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 PUS7LQ9H0K6 701 aaKnown RBP14.44□□□□□ -0.1
HDAC6-219ENST00000476625 TMEM39AQ9NV64 488 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 PPP1R9AQ9ULJ8 1098 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 SLC4A4Q9Y6R1 1079 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 LCTP09848 1927 aa14.44□□□□□ -0.1
HDAC6-219ENST00000476625 SMARCA5O60264 1052 aaPredicted RBP14.43□□□□□ -0.1
HDAC6-219ENST00000476625 SNAI1O95863 264 aaPredicted RBP14.43□□□□□ -0.1
HDAC6-219ENST00000476625 STAT3P40763 770 aa14.43□□□□□ -0.1
HDAC6-219ENST00000476625 ACLYP53396 1101 aa14.43□□□□□ -0.1
HDAC6-219ENST00000476625 FPGSQ05932 587 aa14.43□□□□□ -0.1
HDAC6-219ENST00000476625 KCTD2Q14681 263 aa14.43□□□□□ -0.1
HDAC6-219ENST00000476625 PPM1EQ8WY54 764 aa14.43□□□□□ -0.1
HDAC6-219ENST00000476625 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.43□□□□□ -0.15e-7■■■□□ 15.3
HDAC6-219ENST00000476625 SLC5A4Q9NY91 659 aa14.43□□□□□ -0.1
HDAC6-219ENST00000476625 ZHX1Q9UKY1 873 aaPredicted RBP14.43□□□□□ -0.1
HDAC6-219ENST00000476625 TACC3Q9Y6A5 838 aa14.43□□□□□ -0.1
HDAC6-219ENST00000476625 ZBED9Q6R2W3 1325 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 SLC25A27O95847 323 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 ACRP10323 421 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 AKR1A1P14550 325 aa14.42□□□□□ -0.1
HDAC6-219ENST00000476625 DNAJB2P25686 324 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms