RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 RIOX1Q9H6W3 641 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 COL2A1P02458 1487 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 STXBP3O00186 592 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 WNT7AO00755 349 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 ZNF500O60304 480 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 PDHBP11177 359 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 KCNA3P22001 575 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 SF3B2Q13435 895 aaKnown RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 METTL16Q86W50 562 aaKnown RBP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 TTLL6Q8N841 843 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 GPKOWQ92917 476 aaPredicted RBP eCLIP13.99□□□□□ -0.17
SYNE1-222ENST00000474655 ZMYND12Q9H0C1 365 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 CSRNP2Q9H175 543 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 FAM198AQ9UFP1 575 aa13.99□□□□□ -0.17
SYNE1-222ENST00000474655 YDJCA8MPS7 323 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 ADAMTS3O15072 1205 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 TTLL1O95922 423 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 MSNP26038 577 aaKnown RBP13.98□□□□□ -0.17
SYNE1-222ENST00000474655 DPCR1Q3MIW9 517 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 ASPRV1Q53RT3 343 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 PPP4R3BQ5MIZ7 849 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 NT5DC1Q5TFE4 455 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 USP17L2Q6R6M4 530 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 PIK3AP1Q6ZUJ8 805 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.98□□□□□ -0.17
SYNE1-222ENST00000474655 RTKN2Q8IZC4 609 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 VPS33BQ9H267 617 aa13.98□□□□□ -0.17
SYNE1-222ENST00000474655 ZNF219Q9P2Y4 722 aaPredicted RBP13.98□□□□□ -0.17
SYNE1-222ENST00000474655 ATRNL1Q5VV63 1379 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 GOLGA6L19H0YKK7 550 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 hCG_1984214I3L0E3 225 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 C21orf2O43822 256 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 GOLGA8HP0CJ92 632 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 ATP2B1P20020 1258 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 CCDC93Q567U6 631 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 SPECC1Q5M775 1068 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 ARL6IP4Q66PJ3 421 aaKnown RBP13.97□□□□□ -0.17
SYNE1-222ENST00000474655 KANK3Q6NY19 840 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 DEFB132Q7Z7B7 95 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 ZFPM1Q8IX07 1006 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 ZNF713Q8N859 430 aaPredicted RBP13.97□□□□□ -0.17
SYNE1-222ENST00000474655 CNNM3Q8NE01 707 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 FBXO41Q8TF61 875 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 PIBF1Q8WXW3 757 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 DNAJC18Q9H819 358 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 PI4KBQ9UBF8 816 aa13.97□□□□□ -0.17
SYNE1-222ENST00000474655 USP17L5A8MUK1 530 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 PPIP5K2O43314 1243 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 PTMAP06454 111 aaKnown RBP13.96□□□□□ -0.17
SYNE1-222ENST00000474655 CDC25BP30305 580 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 ZNF75DP51815 510 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 PTGDRQ13258 359 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 ZRSR1Q15695 479 aaKnown RBP13.96□□□□□ -0.17
SYNE1-222ENST00000474655 RASGRP2Q7LDG7 609 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 FOXP4Q8IVH2 680 aaPredicted RBP13.96□□□□□ -0.17
SYNE1-222ENST00000474655 C4orf32Q8N8J7 132 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 CCDC12Q8WUD4 166 aaPredicted RBP13.96□□□□□ -0.17
SYNE1-222ENST00000474655 RRP36Q96EU6 259 aaKnown RBP13.96□□□□□ -0.17
SYNE1-222ENST00000474655 HOOK1Q9UJC3 728 aaKnown RBP13.96□□□□□ -0.17
SYNE1-222ENST00000474655 PCDHA6Q9UN73 950 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 PCDHA8Q9Y5H6 950 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 PCDHAC2Q9Y5I4 1007 aa13.96□□□□□ -0.17
SYNE1-222ENST00000474655 BRCA1P38398 1863 aaKnown RBP13.96□□□□□ -0.17
SYNE1-222ENST00000474655 A0A087WWV3 80 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 ESYT2A0FGR8 921 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 BECN2A8MW95 431 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 POLR2DO15514 142 aaKnown RBP13.96□□□□□ -0.18
SYNE1-222ENST00000474655 ACTN4O43707 911 aaKnown RBP13.96□□□□□ -0.18
SYNE1-222ENST00000474655 TPM3P06753 285 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 SARSP49591 514 aaKnown RBP13.96□□□□□ -0.18
SYNE1-222ENST00000474655 PLCB2Q00722 1185 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 PNOCQ13519 176 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 ZNF174Q15697 407 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 TATDN1Q6P1N9 297 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 SH3BP5LQ7L8J4 393 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 SPATA20Q8TB22 786 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 MKL1Q969V6 931 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 ARFGEF1Q9Y6D6 1849 aa13.96□□□□□ -0.18
SYNE1-222ENST00000474655 DDTLA6NHG4 134 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-222ENST00000474655 IKBKBO14920 756 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 ENTPD3O75355 529 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 ZNF543Q08ER8 600 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 USP49Q70CQ1 688 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 HEATR3Q7Z4Q2 680 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 MRFAP1L1Q96HT8 127 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 CLIP2Q9UDT6 1046 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 PCDHA5Q9Y5H7 936 aa13.95□□□□□ -0.18
SYNE1-222ENST00000474655 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.95□□□□□ -0.18
SYNE1-222ENST00000474655 COL4A5P29400 1685 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 GOLGA6L6A8MZA4 724 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 VIL1P09327 827 aaKnown RBP13.94□□□□□ -0.18
SYNE1-222ENST00000474655 GNA11P29992 359 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 POSTNQ15063 836 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 AOPEPQ8N6M6 819 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 GMLQ99445 158 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 TRIM5Q9C035 493 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 CPVLQ9H3G5 476 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 SEC63Q9UGP8 760 aaKnown RBP13.94□□□□□ -0.18
SYNE1-222ENST00000474655 SERTAD1Q9UHV2 236 aa13.94□□□□□ -0.18
SYNE1-222ENST00000474655 MTMR7Q9Y216 660 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms