RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 XRCC5P13010 732 aaKnown RBP21.32■■□□□ 1
UPF3A-203ENST00000474056 PTPREP23469 700 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 RGS2P41220 211 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 TFAP4Q01664 338 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 ALX1Q15699 326 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 MB21D1Q8N884 522 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 NUP88Q99567 741 aaPredicted RBP21.32■■□□□ 1
UPF3A-203ENST00000474056 APBA2Q99767 749 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 PAK6Q9NQU5 681 aaPredicted RBP21.32■■□□□ 1
UPF3A-203ENST00000474056 PLXNA1Q9UIW2 1896 aa21.32■■□□□ 1
UPF3A-203ENST00000474056 SGPL1O95470 568 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 NDUFB10O96000 172 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 FGAP02671 866 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 MAP2K5Q13163 448 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 GRB14Q14449 540 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 CCL14Q16627 93 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.31■■□□□ 1
UPF3A-203ENST00000474056 ANAPC4Q9UJX5 808 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 PPP1R9AQ9ULJ8 1098 aa21.31■■□□□ 1
UPF3A-203ENST00000474056 SLC15A5A6NIM6 579 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 F5H6K3 240 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 TTLL1O95922 423 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 ZKSCAN1P17029 563 aaPredicted RBP21.3■■□□□ 1
UPF3A-203ENST00000474056 ERCC3P19447 782 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 KLRC3Q07444 240 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 PLS1Q14651 629 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 LRRC47Q8N1G4 583 aaKnown RBP21.3■■□□□ 1
UPF3A-203ENST00000474056 MKL1Q969V6 931 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 DEFB118Q96PH6 123 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 ADAMTS5Q9UNA0 930 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 IVNS1ABPQ9Y6Y0 642 aa21.3■■□□□ 1
UPF3A-203ENST00000474056 ZMYM6O95789 1325 aa21.29■■□□□ 1
UPF3A-203ENST00000474056 RPTORQ8N122 1335 aa21.29■■□□□ 1
UPF3A-203ENST00000474056 TMEM132BQ14DG7 1078 aa21.29■■□□□ 1
UPF3A-203ENST00000474056 SHCBP1Q8NEM2 672 aa21.29■■□□□ 1
UPF3A-203ENST00000474056 ALPK3Q96L96 1907 aa21.29■■□□□ 1
UPF3A-203ENST00000474056 TSPY2A6NKD2 308 aa21.28■■□□□ 1
UPF3A-203ENST00000474056 PRKAR2AP13861 404 aaKnown RBP21.28■■□□□ 1
UPF3A-203ENST00000474056 MAP3K21Q5TCX8 1036 aa21.28■■□□□ 1
UPF3A-203ENST00000474056 PRPF38BQ5VTL8 546 aaKnown RBP21.28■■□□□ 1
UPF3A-203ENST00000474056 CWC27Q6UX04 472 aaKnown RBP21.28■■□□□ 1
UPF3A-203ENST00000474056 TRMT44Q8IYL2 757 aaKnown RBP21.28■■□□□ 1
UPF3A-203ENST00000474056 NPLOC4Q8TAT6 608 aa21.28■■□□□ 1
UPF3A-203ENST00000474056 HMX1Q9NP08 348 aaPredicted RBP21.28■■□□□ 1
UPF3A-203ENST00000474056 DIAPH3Q9NSV4 1193 aa21.28■■□□□ 1
UPF3A-203ENST00000474056 FLRT1Q9NZU1 646 aa21.28■■□□□ 1
UPF3A-203ENST00000474056 VWA5AO00534 786 aa21.27■■□□□ 1
UPF3A-203ENST00000474056 GSPT1P15170 499 aaKnown RBP21.27■■□□□ 1
UPF3A-203ENST00000474056 HAND2P61296 217 aa21.27■■□□□ 1
UPF3A-203ENST00000474056 CACNB2Q08289 660 aaPredicted RBP21.27■■□□□ 1
UPF3A-203ENST00000474056 UBE2Q1Q7Z7E8 422 aa21.27■■□□□ 1
UPF3A-203ENST00000474056 NCAPG2Q86XI2 1143 aa21.27■■□□□ 1
UPF3A-203ENST00000474056 REPS2Q8NFH8 660 aa21.27■■□□□ 1
UPF3A-203ENST00000474056 SLF1Q9BQI6 1058 aa21.27■■□□□ 1
UPF3A-203ENST00000474056 ORC4O43929 436 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 RANBP6O60518 1105 aaKnown RBP21.26■□□□□ 0.99
UPF3A-203ENST00000474056 NMT2O60551 498 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 HOXC6P09630 235 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 FGRP09769 529 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 ADORA2AP29274 412 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 MFAP1P55081 439 aaKnown RBP21.26■□□□□ 0.99
UPF3A-203ENST00000474056 TTC22Q5TAA0 569 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 GMCL1P1Q8NEA9 526 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 CRISPLD2Q9H0B8 497 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 IL17RBQ9NRM6 502 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 TOMM22Q9NS69 142 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 SYNPO2Q9UMS6 1093 aa21.26■□□□□ 0.99
UPF3A-203ENST00000474056 HIP1O00291 1037 aa21.25■□□□□ 0.99
UPF3A-203ENST00000474056 FARP2O94887 1054 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-203ENST00000474056 TFRCP02786 760 aaKnown RBP21.25■□□□□ 0.99
UPF3A-203ENST00000474056 SLFN13Q68D06 897 aa21.25■□□□□ 0.99
UPF3A-203ENST00000474056 NBPF3Q9H094 633 aa21.25■□□□□ 0.99
UPF3A-203ENST00000474056 MROH8Q9H579 483 aa21.25■□□□□ 0.99
UPF3A-203ENST00000474056 ZNF214Q9UL59 606 aaPredicted RBP21.25■□□□□ 0.99
UPF3A-203ENST00000474056 STRNO43815 780 aa21.24■□□□□ 0.99
UPF3A-203ENST00000474056 SLC25A27O95847 323 aa21.24■□□□□ 0.99
UPF3A-203ENST00000474056 CCND3P30281 292 aaPredicted RBP21.24■□□□□ 0.99
UPF3A-203ENST00000474056 RRP12Q5JTH9 1297 aaKnown RBP21.24■□□□□ 0.99
UPF3A-203ENST00000474056 RIOX2Q8IUF8 465 aa21.24■□□□□ 0.99
UPF3A-203ENST00000474056 IL25Q9H293 177 aa21.24■□□□□ 0.99
UPF3A-203ENST00000474056 STX8Q9UNK0 236 aa21.24■□□□□ 0.99
UPF3A-203ENST00000474056 SMCHD1A6NHR9 2005 aa21.23■□□□□ 0.99
UPF3A-203ENST00000474056 COBLO75128 1261 aa21.23■□□□□ 0.99
UPF3A-203ENST00000474056 STAT3P40763 770 aa21.23■□□□□ 0.99
UPF3A-203ENST00000474056 DPP9Q86TI2 863 aa21.23■□□□□ 0.99
UPF3A-203ENST00000474056 TBC1D10CQ8IV04 446 aa21.23■□□□□ 0.99
UPF3A-203ENST00000474056 PRPF38AQ8NAV1 312 aaKnown RBP21.23■□□□□ 0.99
UPF3A-203ENST00000474056 CHMP4CQ96CF2 233 aa21.23■□□□□ 0.99
UPF3A-203ENST00000474056 CEP290O15078 2479 aa21.22■□□□□ 0.99
UPF3A-203ENST00000474056 BMP3P12645 472 aa21.22■□□□□ 0.99
UPF3A-203ENST00000474056 PPP4R3BQ5MIZ7 849 aa21.22■□□□□ 0.99
UPF3A-203ENST00000474056 RASGRP2Q7LDG7 609 aa21.22■□□□□ 0.99
UPF3A-203ENST00000474056 STAG1Q8WVM7 1258 aa21.22■□□□□ 0.99
UPF3A-203ENST00000474056 KIFC2Q96AC6 838 aa21.22■□□□□ 0.99
UPF3A-203ENST00000474056 FEM1BQ9UK73 627 aa21.22■□□□□ 0.99
UPF3A-203ENST00000474056 IGHA2P01877 340 aa21.21■□□□□ 0.99
UPF3A-203ENST00000474056 CAPN2P17655 700 aa21.21■□□□□ 0.99
UPF3A-203ENST00000474056 NOVP48745 357 aa21.21■□□□□ 0.99
UPF3A-203ENST00000474056 AKNAD1Q5T1N1 836 aa21.21■□□□□ 0.99
UPF3A-203ENST00000474056 MFSD14CQ5VZR4 134 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms