RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 EEF2KMTQ96G04 330 aa21.69■■□□□ 1.06
VIM-203ENST00000469543 BAG1Q99933 345 aaPredicted RBP21.69■■□□□ 1.06
VIM-203ENST00000469543 TMEM47Q9BQJ4 181 aa21.69■■□□□ 1.06
VIM-203ENST00000469543 TMEM60Q9H2L4 133 aa21.69■■□□□ 1.06
VIM-203ENST00000469543 VAT1LQ9HCJ6 419 aa21.69■■□□□ 1.06
VIM-203ENST00000469543 ERCC6LQ2NKX8 1250 aa21.69■■□□□ 1.06
VIM-203ENST00000469543 WWC2Q6AWC2 1192 aa21.69■■□□□ 1.06
VIM-203ENST00000469543 PDS5AQ29RF7 1337 aaKnown RBP21.68■■□□□ 1.06
VIM-203ENST00000469543 BTDP43251 543 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 C4orf32Q8N8J7 132 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 TRIML1Q8N9V2 468 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 CD209Q9NNX6 404 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 SRCAPQ6ZRS2 3230 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 KIF5BP33176 963 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 CCT6AP40227 531 aaKnown RBP21.68■■□□□ 1.06
VIM-203ENST00000469543 USP17L2Q6R6M4 530 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 IRX2Q9BZI1 471 aaPredicted RBP21.68■■□□□ 1.06
VIM-203ENST00000469543 CTNND2Q9UQB3 1225 aa21.68■■□□□ 1.06
VIM-203ENST00000469543 RASA1P20936 1047 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 PDXDC2PQ6P474 469 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 DGKHQ86XP1 1220 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 RPGRQ92834 1020 aaKnown RBP21.67■■□□□ 1.06
VIM-203ENST00000469543 RTFDC1Q9BY42 306 aaPredicted RBP21.67■■□□□ 1.06
VIM-203ENST00000469543 DACH1Q9UI36 760 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 ETF1P62495 437 aaKnown RBP21.67■■□□□ 1.06
VIM-203ENST00000469543 KMT5BQ4FZB7 885 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 POLLQ9UGP5 575 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 PPP2R2CQ9Y2T4 447 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 SYNRGQ9UMZ2 1314 aa21.67■■□□□ 1.06
VIM-203ENST00000469543 NRDCO43847 1150 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 SLURP2P0DP57 97 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 ERCC5P28715 1186 aaPredicted RBP21.66■■□□□ 1.06
VIM-203ENST00000469543 GDAQ9Y2T3 454 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 LEMD3Q9Y2U8 911 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 KIAA1551Q9HCM1 1747 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 BAG3O95817 575 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 RBL2Q08999 1139 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 RRAGBQ5VZM2 374 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 ZNF804AQ7Z570 1209 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 IQUBQ8NA54 791 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 PCDHA6Q9UN73 950 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 PCDHA4Q9UN74 947 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 PCDHA8Q9Y5H6 950 aa21.66■■□□□ 1.06
VIM-203ENST00000469543 SOWAHDA6NJG2 315 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 F8W031 263 aaPredicted RBP21.65■■□□□ 1.06
VIM-203ENST00000469543 SLU7O95391 586 aaKnown RBP21.65■■□□□ 1.06
VIM-203ENST00000469543 SPATA1Q5VX52 437 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 CLEC10AQ8IUN9 316 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 GSDMAQ96QA5 445 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 WDR24Q96S15 920 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 ZMYND15Q9H091 742 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 CCDC88AQ3V6T2 1871 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 A0A1B0GTH6 734 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 MFSD14BQ5SR56 506 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 LRRC15Q8TF66 581 aa21.65■■□□□ 1.06
VIM-203ENST00000469543 KLRF2D3W0D1 207 aa21.64■■□□□ 1.06
VIM-203ENST00000469543 RIMBP2O15034 1052 aa21.64■■□□□ 1.06
VIM-203ENST00000469543 GYS1P13807 737 aa21.64■■□□□ 1.06
VIM-203ENST00000469543 IGSF3O75054 1194 aa21.64■■□□□ 1.05
VIM-203ENST00000469543 SERPINB2P05120 415 aa21.64■■□□□ 1.05
VIM-203ENST00000469543 CDK8P49336 464 aa21.64■■□□□ 1.05
VIM-203ENST00000469543 EIF6P56537 245 aaKnown RBP21.64■■□□□ 1.05
VIM-203ENST00000469543 FBXO38Q6PIJ6 1188 aa21.64■■□□□ 1.05
VIM-203ENST00000469543 UBA5Q9GZZ9 404 aa21.64■■□□□ 1.05
VIM-203ENST00000469543 EPC1Q9H2F5 836 aa21.64■■□□□ 1.05
VIM-203ENST00000469543 RNF225M0QZC1 329 aaPredicted RBP21.63■■□□□ 1.05
VIM-203ENST00000469543 GRM4Q14833 912 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 CCDC93Q567U6 631 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 GJD4Q96KN9 370 aaPredicted RBP21.63■■□□□ 1.05
VIM-203ENST00000469543 MXD3Q9BW11 206 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 VPS16Q9H269 839 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 L2HGDHQ9H9P8 463 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 CCDC194A0A1B0GVG4 234 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 M0R2N6 131 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 ARHGAP6O43182 974 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 URI1O94763 535 aaPredicted RBP21.63■■□□□ 1.05
VIM-203ENST00000469543 NAALADL2Q58DX5 795 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 TEX11Q8IYF3 940 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 EYA3Q99504 573 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 ADD3Q9UEY8 706 aaKnown RBP21.63■■□□□ 1.05
VIM-203ENST00000469543 DLEC1Q9Y238 1755 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 TRIM49BA6NDI0 452 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 KCNJ6P48051 423 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 IGSF22Q8N9C0 903 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 RASSF8Q8NHQ8 419 aa21.63■■□□□ 1.05
VIM-203ENST00000469543 C6orf229H3BNL8 230 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 BMP15O95972 392 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 PPP4CP60510 307 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 PICALMQ13492 652 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 CEP95Q96GE4 821 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 NOL10Q9BSC4 688 aaKnown RBP21.62■■□□□ 1.05
VIM-203ENST00000469543 COL24A1Q17RW2 1714 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 STXBP3O00186 592 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 RGL2O15211 777 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 CASP14P31944 242 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 CDKAL1Q5VV42 579 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 ERO1AQ96HE7 468 aa21.62■■□□□ 1.05
VIM-203ENST00000469543 MRPL44Q9H9J2 332 aaKnown RBP21.62■■□□□ 1.05
VIM-203ENST00000469543 PALM3A6NDB9 673 aaPredicted RBP21.61■■□□□ 1.05
VIM-203ENST00000469543 PRCPP42785 496 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms