RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 MMP14P50281 582 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 ZNF75DP51815 510 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 NLRP5P59047 1200 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 ASPRV1Q53RT3 343 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 DCAF8Q5TAQ9 597 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 CDC42EP5Q6NZY7 148 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 USP17L1Q7RTZ2 530 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 LUZP1Q86V48 1076 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 TEX2Q8IWB9 1127 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 DHX40Q8IX18 779 aaKnown RBP8.71□□□□□ -1.02
COL6A3-208ENST00000468792 BLIDQ8IZY5 108 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 SPDYE1Q8NFV5 336 aaPredicted RBP8.71□□□□□ -1.02
COL6A3-208ENST00000468792 ZNF622Q969S3 477 aaKnown RBP eCLIP8.71□□□□□ -1.02
COL6A3-208ENST00000468792 MKL1Q969V6 931 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 PSMD1Q99460 953 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 ZMYND12Q9H0C1 365 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 RIOX1Q9H6W3 641 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 USP40Q9NVE5 1235 aa8.71□□□□□ -1.02
COL6A3-208ENST00000468792 ZNF646O15015 1829 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 GREB1LQ9C091 1923 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 BECN2A8MW95 431 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 KLRF2D3W0D1 207 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 STXBP3O00186 592 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 CYTH3O43739 400 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 NEMFO60524 1076 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 ENTPD3O75355 529 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 TTLL1O95922 423 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 PTMAP06454 111 aaKnown RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 GNA11P29992 359 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 PRPHP41219 470 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 CRKP46108 304 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 TERF1P54274 439 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 TPM4P67936 248 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 LONRF3Q496Y0 759 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 TPRNQ4KMQ1 711 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 TTC38Q5R3I4 469 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 PPP1R18Q6NYC8 613 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 C11orf57Q6ZUT1 292 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 PAXIP1Q6ZW49 1069 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 SH3RF1Q7Z6J0 888 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 FOXP4Q8IVH2 680 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 RTKN2Q8IZC4 609 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 SLC44A5Q8NCS7 719 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 CNNM3Q8NE01 707 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 CEP95Q96GE4 821 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 CLIC6Q96NY7 704 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 ANO8Q9HCE9 1232 aaPredicted RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 SAP30BPQ9UHR5 308 aaKnown RBP8.7□□□□□ -1.02
COL6A3-208ENST00000468792 STX8Q9UNK0 236 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 SLX4Q8IY92 1834 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 ATRNL1Q5VV63 1379 aa8.7□□□□□ -1.02
COL6A3-208ENST00000468792 ACTN4O43707 911 aaKnown RBP8.69□□□□□ -1.02
COL6A3-208ENST00000468792 ECE2O60344 883 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 SLFN14P0C7P3 912 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 PDHBP11177 359 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 SHMT1P34896 483 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 LONP1P36776 959 aaKnown RBP8.69□□□□□ -1.02
COL6A3-208ENST00000468792 EZH2Q15910 746 aaKnown RBP8.69□□□□□ -1.02
COL6A3-208ENST00000468792 DOK7Q18PE1 504 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 SLC35G1Q2M3R5 365 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 EARS2Q5JPH6 523 aaKnown RBP8.69□□□□□ -1.02
COL6A3-208ENST00000468792 GPATCH4Q5T3I0 446 aaKnown RBP8.69□□□□□ -1.02
COL6A3-208ENST00000468792 SOGA3Q5TF21 947 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 TATDN1Q6P1N9 297 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 POTEAQ6S8J7 498 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 STAG2Q8N3U4 1231 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 C4orf32Q8N8J7 132 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 MLKLQ8NB16 471 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 RRP36Q96EU6 259 aaKnown RBP8.69□□□□□ -1.02
COL6A3-208ENST00000468792 DDX4Q9NQI0 724 aaKnown RBP8.69□□□□□ -1.02
COL6A3-208ENST00000468792 PI4KBQ9UBF8 816 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 DACH1Q9UI36 760 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 CLEC11AQ9Y240 323 aa8.69□□□□□ -1.02
COL6A3-208ENST00000468792 PSME4Q14997 1843 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 POLR2DO15514 142 aaKnown RBP8.68□□□□□ -1.02
COL6A3-208ENST00000468792 OFD1O75665 1012 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 SMC2O95347 1197 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 MYL1P05976 194 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 BAG6P46379 1132 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 PTGDRQ13258 359 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 NCAPHQ15003 741 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 POSTNQ15063 836 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 DPCR1Q3MIW9 517 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 FKBP1CQ5VVH2 108 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 WWC2Q6AWC2 1192 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 KRT25Q7Z3Z0 450 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 PIBF1Q8WXW3 757 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 MTMR8Q96EF0 704 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 AK8Q96MA6 479 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 GSDMAQ96QA5 445 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 TRIM5Q9C035 493 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 CSRNP2Q9H175 543 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 GLT8D2Q9H1C3 349 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 C6orf50Q9HD87 102 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 SPTLC3Q9NUV7 552 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 NYAP2Q9P242 653 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 IMPACTQ9P2X3 320 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 SEC63Q9UGP8 760 aaKnown RBP8.68□□□□□ -1.02
COL6A3-208ENST00000468792 PCDHA6Q9UN73 950 aa8.68□□□□□ -1.02
COL6A3-208ENST00000468792 PCDHA8Q9Y5H6 950 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms