RNA–Protein interactions for RNA: ENST00000468040.2

SNIP1-202, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 5

Gene SNIP1, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-202ENST00000468040 GPATCH4Q5T3I0 446 aaKnown RBP17.76■□□□□ 0.43
SNIP1-202ENST00000468040 OTUD7BQ6GQQ9 843 aa17.76■□□□□ 0.43
SNIP1-202ENST00000468040 ANKRD23Q86SG2 305 aa17.76■□□□□ 0.43
SNIP1-202ENST00000468040 CTCFLQ8NI51 663 aaPredicted RBP17.76■□□□□ 0.43
SNIP1-202ENST00000468040 NUP133Q8WUM0 1156 aa17.76■□□□□ 0.43
SNIP1-202ENST00000468040 RPAP3Q9H6T3 665 aaPredicted RBP17.76■□□□□ 0.43
SNIP1-202ENST00000468040 ZCCHC17Q9NP64 241 aaKnown RBP17.76■□□□□ 0.43
SNIP1-202ENST00000468040 BRPF3Q9ULD4 1205 aa17.76■□□□□ 0.43
SNIP1-202ENST00000468040 THSD7BQ9C0I4 1608 aa17.76■□□□□ 0.43
SNIP1-202ENST00000468040 GOLGA8BA8MQT2 603 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L15C9J2P7 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 BTBD19C9JJ37 291 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L13C9JLJ4 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L11C9JVI0 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L18D6R9N7 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L22D6RA61 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L17D6RBQ6 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L19D6RCP7 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L20D6RJB6 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 AOC2O75106 756 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 PARP1P09874 1014 aaKnown RBP17.75■□□□□ 0.43
SNIP1-202ENST00000468040 HOXA7P31268 230 aaPredicted RBP17.75■□□□□ 0.43
SNIP1-202ENST00000468040 KIF5BP33176 963 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 TM4SF4P48230 202 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 ZNF543Q08ER8 600 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 USP17L24Q0WX57 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 GRM4Q14833 912 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 FAM83BQ5T0W9 1011 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 TREML2Q5T2D2 321 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 GPAT2Q6NUI2 795 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 MICU3Q86XE3 530 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 TANGO6Q9C0B7 1094 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 PNMA3Q9UL41 463 aa17.75■□□□□ 0.43
SNIP1-202ENST00000468040 ISY1Q9ULR0 285 aaKnown RBP17.75■□□□□ 0.43
SNIP1-202ENST00000468040 NAP1L2Q9ULW6 460 aaPredicted RBP17.75■□□□□ 0.43
SNIP1-202ENST00000468040 OSBPP22059 807 aa17.74■□□□□ 0.43
SNIP1-202ENST00000468040 MCM2P49736 904 aa17.74■□□□□ 0.43
SNIP1-202ENST00000468040 PPP2R5BQ15173 497 aa17.74■□□□□ 0.43
SNIP1-202ENST00000468040 IFNL1Q8IU54 200 aa17.74■□□□□ 0.43
SNIP1-202ENST00000468040 ZNF274Q96GC6 653 aaPredicted RBP17.74■□□□□ 0.43
SNIP1-202ENST00000468040 NUP88Q99567 741 aaPredicted RBP17.74■□□□□ 0.43
SNIP1-202ENST00000468040 MYL10Q9BUA6 226 aa17.74■□□□□ 0.43
SNIP1-202ENST00000468040 CCDC196A0A1B0GTZ2 297 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 PDHXO00330 501 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 GNAQP50148 359 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 METAP2P50579 478 aaKnown RBP eCLIP17.73■□□□□ 0.43
SNIP1-202ENST00000468040 STAT2P52630 851 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 IRX3P78415 501 aaPredicted RBP17.73■□□□□ 0.43
SNIP1-202ENST00000468040 CATSPERGQ6ZRH7 1159 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 KCTD1Q719H9 257 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 RASGRP2Q7LDG7 609 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 FAM160B2Q86V87 743 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 FAM43AQ8N2R8 423 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 FANCBQ8NB91 859 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 CHURC1Q8WUH1 139 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 CHMP4CQ96CF2 233 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 ZIC5Q96T25 663 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 PTPN18Q99952 460 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 RBM28Q9NW13 759 aaKnown RBP17.73■□□□□ 0.43
SNIP1-202ENST00000468040 FEM1BQ9UK73 627 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 TPCN1Q9ULQ1 816 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 LIMCH1Q9UPQ0 1083 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 NID2Q14112 1375 aa17.73■□□□□ 0.43
SNIP1-202ENST00000468040 FRMPD2Q68DX3 1309 aaPredicted RBP17.72■□□□□ 0.43
SNIP1-202ENST00000468040 MYPNQ86TC9 1320 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 PALM3A6NDB9 673 aaPredicted RBP17.72■□□□□ 0.43
SNIP1-202ENST00000468040 GOLGA8AA7E2F4 631 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 PLA2G6O60733 806 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 FLOT1O75955 427 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 ALDH1A1P00352 501 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 PDIA3P30101 505 aaKnown RBP17.72■□□□□ 0.43
SNIP1-202ENST00000468040 IKQ13123 557 aaPredicted RBP17.72■□□□□ 0.43
SNIP1-202ENST00000468040 RTN1Q16799 776 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 PARK7Q99497 189 aaKnown RBP17.72■□□□□ 0.43
SNIP1-202ENST00000468040 LZTS2Q9BRK4 669 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 LARP6Q9BRS8 491 aaKnown RBP17.72■□□□□ 0.43
SNIP1-202ENST00000468040 GPCPD1Q9NPB8 672 aa17.72■□□□□ 0.43
SNIP1-202ENST00000468040 TMEM232C9JQI7 657 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 IGF2BP3O00425 579 aaKnown RBP eCLIP17.71■□□□□ 0.43
SNIP1-202ENST00000468040 GOLGA8HP0CJ92 632 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 RXRAP19793 462 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 COG2Q14746 738 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 BTNL9Q6UXG8 535 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 NOL8Q76FK4 1167 aaKnown RBP17.71■□□□□ 0.43
SNIP1-202ENST00000468040 CCDC144CPQ8IYA2 1237 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 ZSCAN31Q96LW9 406 aaPredicted RBP17.71■□□□□ 0.43
SNIP1-202ENST00000468040 SLF1Q9BQI6 1058 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 ASCC2Q9H1I8 757 aaPredicted RBP17.71■□□□□ 0.43
SNIP1-202ENST00000468040 HOXC10Q9NYD6 342 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 MAD2L2Q9UI95 211 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 HPS5Q9UPZ3 1129 aa17.71■□□□□ 0.43
SNIP1-202ENST00000468040 KLRF2D3W0D1 207 aa17.7■□□□□ 0.42
SNIP1-202ENST00000468040 RAB11FIP4Q86YS3 637 aa17.7■□□□□ 0.42
SNIP1-202ENST00000468040 PRPF38AQ8NAV1 312 aaKnown RBP17.7■□□□□ 0.42
SNIP1-202ENST00000468040 GTF3C2Q8WUA4 911 aaPredicted RBP17.7■□□□□ 0.42
SNIP1-202ENST00000468040 SLKQ9H2G2 1235 aaPredicted RBP17.7■□□□□ 0.42
SNIP1-202ENST00000468040 PPP1R9AQ9ULJ8 1098 aa17.7■□□□□ 0.42
SNIP1-202ENST00000468040 DHX16O60231 1041 aaKnown RBP17.69■□□□□ 0.42
SNIP1-202ENST00000468040 PFKFB2O60825 505 aa17.69■□□□□ 0.42
SNIP1-202ENST00000468040 FDX1P10109 184 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms