RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 KRT40Q6A162 431 aa15.07■□□□□ 0
COL4A1-202ENST00000467182 TTBK2Q6IQ55 1244 aa15.07■□□□□ 0
COL4A1-202ENST00000467182 KRT26Q7Z3Y9 468 aa15.07■□□□□ 0
COL4A1-202ENST00000467182 PNMA8AQ86V59 439 aaPredicted RBP15.07■□□□□ 0
COL4A1-202ENST00000467182 SULF1Q8IWU6 871 aa15.07■□□□□ 0
COL4A1-202ENST00000467182 GMCL1Q96IK5 515 aa15.07■□□□□ 0
COL4A1-202ENST00000467182 RIOX1Q9H6W3 641 aa15.07■□□□□ 0
COL4A1-202ENST00000467182 ARHGEF10LQ9HCE6 1279 aa15.07■□□□□ 0
COL4A1-202ENST00000467182 H3BQV1 296 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 NDUFB10O96000 172 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 PFKFB3Q16875 520 aaPredicted RBP15.06■□□□□ 0
COL4A1-202ENST00000467182 NOL9Q5SY16 702 aaKnown RBP15.06■□□□□ 0
COL4A1-202ENST00000467182 IFFO2Q5TF58 517 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 USP48Q86UV5 1035 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 FERMT3Q86UX7 667 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 SCYL3Q8IZE3 742 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.06■□□□□ 0
COL4A1-202ENST00000467182 CDCA5Q96FF9 252 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 UBA5Q9GZZ9 404 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 GPCPD1Q9NPB8 672 aa15.06■□□□□ 0
COL4A1-202ENST00000467182 BAZ2BQ9UIF8 2168 aaKnown RBP15.05■□□□□ 0
COL4A1-202ENST00000467182 KIF28PB7ZC32 967 aa15.05■□□□□ -0
COL4A1-202ENST00000467182 MCM4P33991 863 aa15.05■□□□□ -0
COL4A1-202ENST00000467182 KIF23Q02241 960 aaPredicted RBP15.05■□□□□ -0
COL4A1-202ENST00000467182 EAPPQ56P03 285 aaPredicted RBP15.05■□□□□ -0
COL4A1-202ENST00000467182 GPATCH4Q5T3I0 446 aaKnown RBP15.05■□□□□ -0
COL4A1-202ENST00000467182 KCTD1Q719H9 257 aa15.05■□□□□ -0
COL4A1-202ENST00000467182 ZKSCAN4Q969J2 545 aaPredicted RBP15.05■□□□□ -0
COL4A1-202ENST00000467182 MTMR8Q96EF0 704 aa15.05■□□□□ -0
COL4A1-202ENST00000467182 WRNIP1Q96S55 665 aa15.05■□□□□ -0
COL4A1-202ENST00000467182 TCHHQ07283 1943 aa15.05■□□□□ -0
COL4A1-202ENST00000467182 SCG2P13521 617 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 SLC1A4P43007 532 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 AKAP17AQ02040 695 aaKnown RBP15.04■□□□□ -0
COL4A1-202ENST00000467182 NPY5RQ15761 445 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 FAM173BQ6P4H8 233 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 PHF20Q9BVI0 1012 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 VCPKMTQ9H867 229 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 RRAGCQ9HB90 399 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 VPS54Q9P1Q0 977 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 RBM27Q9P2N5 1060 aaKnown RBP15.04■□□□□ -0
COL4A1-202ENST00000467182 KCNJ14Q9UNX9 436 aa15.04■□□□□ -0
COL4A1-202ENST00000467182 MMP1P03956 469 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 PTPRAP18433 802 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 CCDC96Q2M329 555 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 TYW1BQ6NUM6 668 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 BTNL9Q6UXG8 535 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.03■□□□□ -0
COL4A1-202ENST00000467182 ADGRF4Q8IZF3 695 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 GBP4Q96PP9 640 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 PIGSQ96S52 555 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 NUP88Q99567 741 aaPredicted RBP15.03■□□□□ -0
COL4A1-202ENST00000467182 WDR18Q9BV38 432 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 ZSCAN16Q9H4T2 348 aaPredicted RBP15.03■□□□□ -0
COL4A1-202ENST00000467182 JMJD4Q9H9V9 463 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 SNCAIPQ9Y6H5 919 aa15.03■□□□□ -0
COL4A1-202ENST00000467182 PARP14Q460N5 1801 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 BMP3P12645 472 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 SLC16A2P36021 539 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 DNM1Q05193 864 aaKnown RBP15.02■□□□□ -0
COL4A1-202ENST00000467182 PRKG1Q13976 671 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 MAP3K11Q16584 847 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 FOXD4L6Q3SYB3 417 aaPredicted RBP15.02■□□□□ -0
COL4A1-202ENST00000467182 WWC2Q6AWC2 1192 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 FOXD4L3Q6VB84 417 aaPredicted RBP15.02■□□□□ -0
COL4A1-202ENST00000467182 PIBF1Q8WXW3 757 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 GPKOWQ92917 476 aaPredicted RBP eCLIP15.02■□□□□ -0
COL4A1-202ENST00000467182 KIAA1683Q9H0B3 1180 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 SH2D4AQ9H788 454 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 GOPCQ9HD26 462 aa15.02■□□□□ -0
COL4A1-202ENST00000467182 USP17L10C9JJH3 530 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 STXBP3O00186 592 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 ADAMTS3O15072 1205 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 PPP1R11O60927 126 aaPredicted RBP15.01□□□□□ -0.01
COL4A1-202ENST00000467182 U2AF2P26368 475 aaKnown RBP eCLIP15.01□□□□□ -0.01
COL4A1-202ENST00000467182 MAP3K9P80192 1104 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 VGLL4Q14135 290 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 SPICE1Q8N0Z3 855 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 RRP36Q96EU6 259 aaKnown RBP15.01□□□□□ -0.01
COL4A1-202ENST00000467182 VAT1LQ9HCJ6 419 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 NMRK2Q9NPI5 230 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 SH3GLB2Q9NR46 395 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 ATP6V1DQ9Y5K8 247 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 PTPRFP10586 1907 aa15.01□□□□□ -0.01
COL4A1-202ENST00000467182 TMEM232C9JQI7 657 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 RAD21O60216 631 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 DGKZQ13574 1117 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 TRIM29Q14134 588 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 ZYXQ15942 572 aaKnown RBP15□□□□□ -0.01
COL4A1-202ENST00000467182 FAM83BQ5T0W9 1011 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 MAP1SQ66K74 1059 aaPredicted RBP15□□□□□ -0.01
COL4A1-202ENST00000467182 MCTP1Q6DN14 999 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 MOB2Q70IA6 237 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 DIS3L2Q8IYB7 885 aaKnown RBP15□□□□□ -0.01
COL4A1-202ENST00000467182 OXER1Q8TDS5 423 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 TNFRSF25Q93038 417 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 EMILIN3Q9NT22 766 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 BARHL2Q9NY43 387 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 CNPY2Q9Y2B0 182 aa15□□□□□ -0.01
COL4A1-202ENST00000467182 RLFQ13129 1914 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms