RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 MKRN3Q13064 507 aaKnown RBP17.75■□□□□ 0.43
NPHP4-205ENST00000466897 PPP2R5BQ15173 497 aa17.75■□□□□ 0.43
NPHP4-205ENST00000466897 ASPRV1Q53RT3 343 aa17.75■□□□□ 0.43
NPHP4-205ENST00000466897 GPATCH4Q5T3I0 446 aaKnown RBP17.75■□□□□ 0.43
NPHP4-205ENST00000466897 GPAT2Q6NUI2 795 aa17.75■□□□□ 0.43
NPHP4-205ENST00000466897 SYNE3Q6ZMZ3 975 aa17.75■□□□□ 0.43
NPHP4-205ENST00000466897 ZNF274Q96GC6 653 aaPredicted RBP17.75■□□□□ 0.43
NPHP4-205ENST00000466897 BRPF3Q9ULD4 1205 aa17.75■□□□□ 0.43
NPHP4-205ENST00000466897 MYPNQ86TC9 1320 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 KLF18A0A0U1RQI7 1052 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L15C9J2P7 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L13C9JLJ4 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L11C9JVI0 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L18D6R9N7 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L22D6RA61 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L17D6RBQ6 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L19D6RCP7 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L20D6RJB6 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 ZBTB43O43298 467 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 BMP3P12645 472 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 KIF23Q02241 960 aaPredicted RBP17.74■□□□□ 0.43
NPHP4-205ENST00000466897 ZNF543Q08ER8 600 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 USP17L24Q0WX57 530 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 GRM4Q14833 912 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 GADL1Q6ZQY3 521 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 SPICE1Q8N0Z3 855 aa17.74■□□□□ 0.43
NPHP4-205ENST00000466897 RPAP3Q9H6T3 665 aaPredicted RBP17.74■□□□□ 0.43
NPHP4-205ENST00000466897 PALM3A6NDB9 673 aaPredicted RBP17.73■□□□□ 0.43
NPHP4-205ENST00000466897 BTBD19C9JJ37 291 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 KIF5BP33176 963 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 MCM2P49736 904 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 APOBRQ0VD83 1088 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 DGKZQ13574 1117 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 TREML2Q5T2D2 321 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 OTUD7BQ6GQQ9 843 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 CATSPERGQ6ZRH7 1159 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 IFNL1Q8IU54 200 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 PTPN18Q99952 460 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 FEM1BQ9UK73 627 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 PNMA3Q9UL41 463 aa17.73■□□□□ 0.43
NPHP4-205ENST00000466897 AOC2O75106 756 aa17.72■□□□□ 0.43
NPHP4-205ENST00000466897 PARP1P09874 1014 aaKnown RBP17.72■□□□□ 0.43
NPHP4-205ENST00000466897 FAM83BQ5T0W9 1011 aa17.72■□□□□ 0.43
NPHP4-205ENST00000466897 BTNL9Q6UXG8 535 aa17.72■□□□□ 0.43
NPHP4-205ENST00000466897 FAM160B2Q86V87 743 aa17.72■□□□□ 0.43
NPHP4-205ENST00000466897 FANCBQ8NB91 859 aa17.72■□□□□ 0.43
NPHP4-205ENST00000466897 CTCFLQ8NI51 663 aaPredicted RBP17.72■□□□□ 0.43
NPHP4-205ENST00000466897 RBM28Q9NW13 759 aaKnown RBP17.72■□□□□ 0.43
NPHP4-205ENST00000466897 MAD2L2Q9UI95 211 aa17.72■□□□□ 0.43
NPHP4-205ENST00000466897 CCDC196A0A1B0GTZ2 297 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 GOLGA8BA8MQT2 603 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 IGF2BP3O00425 579 aaKnown RBP eCLIP17.71■□□□□ 0.43
NPHP4-205ENST00000466897 RAD21O60216 631 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 ALDH1A1P00352 501 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 SMARCA1P28370 1054 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 PDIA3P30101 505 aaKnown RBP17.71■□□□□ 0.43
NPHP4-205ENST00000466897 GNAQP50148 359 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 STAT2P52630 851 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 GRM1Q13255 1194 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 CCDC96Q2M329 555 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 LBX2Q6XYB7 198 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 MICU3Q86XE3 530 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 FAM43AQ8N2R8 423 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 GTF3C2Q8WUA4 911 aaPredicted RBP17.71■□□□□ 0.43
NPHP4-205ENST00000466897 CHURC1Q8WUH1 139 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 ZIC5Q96T25 663 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 NUP88Q99567 741 aaPredicted RBP17.71■□□□□ 0.43
NPHP4-205ENST00000466897 TANGO6Q9C0B7 1094 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 TPCN1Q9ULQ1 816 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 LIMCH1Q9UPQ0 1083 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 HPS5Q9UPZ3 1129 aa17.71■□□□□ 0.43
NPHP4-205ENST00000466897 PDHXO00330 501 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 FDX1P10109 184 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 OSBPP22059 807 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 METAP2P50579 478 aaKnown RBP eCLIP17.7■□□□□ 0.42
NPHP4-205ENST00000466897 COG2Q14746 738 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 RASGRP2Q7LDG7 609 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 NUP133Q8WUM0 1156 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 PARK7Q99497 189 aaKnown RBP17.7■□□□□ 0.42
NPHP4-205ENST00000466897 LZTS2Q9BRK4 669 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 MYL10Q9BUA6 226 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 CFHR5Q9BXR6 569 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 PPP1R9AQ9ULJ8 1098 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 ADAMTS5Q9UNA0 930 aa17.7■□□□□ 0.42
NPHP4-205ENST00000466897 GOLGA8AA7E2F4 631 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 PFKFB2O60825 505 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 FLOT1O75955 427 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 IRX3P78415 501 aaPredicted RBP17.69■□□□□ 0.42
NPHP4-205ENST00000466897 RTN1Q16799 776 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 KCTD1Q719H9 257 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 PRPF38AQ8NAV1 312 aaKnown RBP17.69■□□□□ 0.42
NPHP4-205ENST00000466897 ZSCAN31Q96LW9 406 aaPredicted RBP17.69■□□□□ 0.42
NPHP4-205ENST00000466897 SLF1Q9BQI6 1058 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 ASCC2Q9H1I8 757 aaPredicted RBP17.69■□□□□ 0.42
NPHP4-205ENST00000466897 SH2B1Q9NRF2 756 aaPredicted RBP17.69■□□□□ 0.42
NPHP4-205ENST00000466897 HOXC10Q9NYD6 342 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 MTMR7Q9Y216 660 aa17.69■□□□□ 0.42
NPHP4-205ENST00000466897 FRMPD2Q68DX3 1309 aaPredicted RBP17.69■□□□□ 0.42
NPHP4-205ENST00000466897 TMEM232C9JQI7 657 aa17.68■□□□□ 0.42
NPHP4-205ENST00000466897 KLRF2D3W0D1 207 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms