RNA–Protein interactions for RNA: ENST00000465525.6

PTPRU-206, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 2

Gene PTPRU, Length 1,650 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-206ENST00000465525 PARP1P09874 1014 aaKnown RBP20.03■□□□□ 0.8
PTPRU-206ENST00000465525 NBPF11Q86T75 865 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 GMCL1P1Q8NEA9 526 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 HHIPL1Q96JK4 782 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 CREBZFQ9NS37 354 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 SMC3Q9UQE7 1217 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.03■□□□□ 0.8
PTPRU-206ENST00000465525 KIF5BP33176 963 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 NTRK3Q16288 839 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 TTBK2Q6IQ55 1244 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 TMTC3Q6ZXV5 915 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 SRBD1Q8N5C6 995 aaKnown RBP20.03■□□□□ 0.8
PTPRU-206ENST00000465525 ZNF280CQ8ND82 737 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 PIBF1Q8WXW3 757 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 OTUD5Q96G74 571 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 INTS4Q96HW7 963 aaKnown RBP20.03■□□□□ 0.8
PTPRU-206ENST00000465525 GOPCQ9HD26 462 aa20.03■□□□□ 0.8
PTPRU-206ENST00000465525 CCDC196A0A1B0GTZ2 297 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 hCG_1642624A0A1W2PR95 340 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 PALM3A6NDB9 673 aaPredicted RBP20.02■□□□□ 0.8
PTPRU-206ENST00000465525 KLRF2D3W0D1 207 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 DHX16O60231 1041 aaKnown RBP20.02■□□□□ 0.8
PTPRU-206ENST00000465525 SNHG28P0DPA3 235 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 GJB2P29033 226 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 SLC1A4P43007 532 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 SLC35G1Q2M3R5 365 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 RGMBQ6NW40 437 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 OPTNQ96CV9 577 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 UBA5Q9GZZ9 404 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 SH2D4AQ9H788 454 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 VCPKMTQ9H867 229 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 RBM28Q9NW13 759 aaKnown RBP20.02■□□□□ 0.8
PTPRU-206ENST00000465525 AFG3L2Q9Y4W6 797 aa20.02■□□□□ 0.8
PTPRU-206ENST00000465525 USP17L10C9JJH3 530 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 ZNF157P51786 506 aaPredicted RBP20.01■□□□□ 0.79
PTPRU-206ENST00000465525 FOSBP53539 338 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 ZNF543Q08ER8 600 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 PPIL2Q13356 520 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 MAP3K14Q99558 947 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 LLPHQ9BRT6 129 aaKnown RBP20.01■□□□□ 0.79
PTPRU-206ENST00000465525 SLC26A6Q9BXS9 759 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 KIAA1683Q9H0B3 1180 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 SYNPO2Q9UMS6 1093 aa20.01■□□□□ 0.79
PTPRU-206ENST00000465525 SLC16A2P36021 539 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 FUT2Q10981 343 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 FAM83BQ5T0W9 1011 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 CPLX2Q6PUV4 134 aaKnown RBP20■□□□□ 0.79
PTPRU-206ENST00000465525 SMARCC2Q8TAQ2 1214 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 DCAF4Q8WV16 495 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 HMGCS2P54868 508 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 ASPRV1Q53RT3 343 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 CCDC102AQ96A19 550 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 GMCL1Q96IK5 515 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 WNK4Q96J92 1243 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 EMILIN3Q9NT22 766 aa20■□□□□ 0.79
PTPRU-206ENST00000465525 CNTNAP5Q8WYK1 1306 aa19.99■□□□□ 0.79
PTPRU-206ENST00000465525 CXCL11O14625 94 aa19.99■□□□□ 0.79
PTPRU-206ENST00000465525 IRF6O14896 467 aa19.99■□□□□ 0.79
PTPRU-206ENST00000465525 FDPSP14324 419 aaKnown RBP19.99■□□□□ 0.79
PTPRU-206ENST00000465525 IFNAR1P17181 557 aa19.99■□□□□ 0.79
PTPRU-206ENST00000465525 BACE1P56817 501 aa19.99■□□□□ 0.79
PTPRU-206ENST00000465525 PPP2R5BQ15173 497 aa19.99■□□□□ 0.79
PTPRU-206ENST00000465525 VAT1LQ9HCJ6 419 aa19.99■□□□□ 0.79
PTPRU-206ENST00000465525 ORC3Q9UBD5 711 aaPredicted RBP19.99■□□□□ 0.79
PTPRU-206ENST00000465525 C19orf81C9J6K1 198 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 CYTH3O43739 400 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 CDKL5O76039 1030 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 ZBTB48P10074 688 aaPredicted RBP19.98■□□□□ 0.79
PTPRU-206ENST00000465525 BMP3P12645 472 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 GJA5P36382 358 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 USP14P54578 494 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 SSRP1Q08945 709 aaKnown RBP19.98■□□□□ 0.79
PTPRU-206ENST00000465525 SPRYD7Q5W111 196 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 SAMD1Q6SPF0 538 aaPredicted RBP19.98■□□□□ 0.79
PTPRU-206ENST00000465525 AIFM3Q96NN9 605 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 KCNH4Q9UQ05 1017 aa19.98■□□□□ 0.79
PTPRU-206ENST00000465525 TMEM232C9JQI7 657 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 FMNL1O95466 1100 aaPredicted RBP19.97■□□□□ 0.79
PTPRU-206ENST00000465525 GNAQP50148 359 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 C1QTNF8P60827 252 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 MKRN3Q13064 507 aaKnown RBP19.97■□□□□ 0.79
PTPRU-206ENST00000465525 IKQ13123 557 aaPredicted RBP19.97■□□□□ 0.79
PTPRU-206ENST00000465525 DEFB115Q30KQ5 88 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 RASAL3Q86YV0 1011 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 V9GY48 417 aaPredicted RBP19.97■□□□□ 0.79
PTPRU-206ENST00000465525 RASSF10A6NK89 507 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 VCAM1P19320 739 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 GPATCH4Q5T3I0 446 aaKnown RBP19.97■□□□□ 0.79
PTPRU-206ENST00000465525 FAM184AQ8NB25 1140 aa19.97■□□□□ 0.79
PTPRU-206ENST00000465525 SLC10A3P09131 477 aa19.96■□□□□ 0.79
PTPRU-206ENST00000465525 SNAP25P60880 206 aa19.96■□□□□ 0.79
PTPRU-206ENST00000465525 SNAPC2Q13487 334 aa19.96■□□□□ 0.79
PTPRU-206ENST00000465525 SH3D19Q5HYK7 790 aa19.96■□□□□ 0.79
PTPRU-206ENST00000465525 TRIM22Q8IYM9 498 aa19.96■□□□□ 0.79
PTPRU-206ENST00000465525 GJB4Q9NTQ9 266 aa19.96■□□□□ 0.79
PTPRU-206ENST00000465525 LOC285556D6RIA3 1793 aa19.96■□□□□ 0.79
PTPRU-206ENST00000465525 PARP14Q460N5 1801 aa19.95■□□□□ 0.78
PTPRU-206ENST00000465525 GTF2A2P52657 109 aa19.95■□□□□ 0.78
PTPRU-206ENST00000465525 HMGN5P82970 282 aaKnown RBP19.95■□□□□ 0.78
PTPRU-206ENST00000465525 HOMER1Q86YM7 354 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms