RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 C12orf42Q96LP6 360 aa11.91□□□□□ -0.5
USP39-212ENST00000465514 TOX2Q96NM4 488 aa11.91□□□□□ -0.5
USP39-212ENST00000465514 FEZ1Q99689 392 aa11.91□□□□□ -0.5
USP39-212ENST00000465514 LRP2BPQ9P2M1 347 aa11.91□□□□□ -0.5
USP39-212ENST00000465514 COL4A4P53420 1690 aaPredicted RBP11.91□□□□□ -0.5
USP39-212ENST00000465514 APBB1O00213 710 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 VCAM1P19320 739 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 NHLH1Q02575 133 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 PPP2R2DQ66LE6 453 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 CRACR2BQ8N4Y2 399 aaPredicted RBP11.9□□□□□ -0.5
USP39-212ENST00000465514 TMEM57Q8N5G2 664 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 SH3RF3Q8TEJ3 882 aaPredicted RBP11.9□□□□□ -0.5
USP39-212ENST00000465514 LENG1Q96BZ8 264 aaPredicted RBP11.9□□□□□ -0.5
USP39-212ENST00000465514 TRIM34Q9BYJ4 488 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 DHX36Q9H2U1 1008 aaKnown RBP11.9□□□□□ -0.5
USP39-212ENST00000465514 STARD7Q9NQZ5 370 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 SNRKQ9NRH2 765 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 GINM1Q9NU53 330 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 ZNF318Q5VUA4 2279 aa11.9□□□□□ -0.5
USP39-212ENST00000465514 ZDBF2Q9HCK1 2354 aa11.9□□□□□ -0.51
USP39-212ENST00000465514 PRR33A8MZF0 331 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 PI4K2BG5E9Z4 385 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 STRNO43815 780 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 TNNI3KQ59H18 835 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 TTC39AQ5SRH9 613 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 ZKSCAN2Q63HK3 967 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 NAA16Q6N069 864 aaPredicted RBP11.89□□□□□ -0.51
USP39-212ENST00000465514 TMEM199Q8N511 208 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 MAML3Q96JK9 1138 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 NOL10Q9BSC4 688 aaKnown RBP11.89□□□□□ -0.51
USP39-212ENST00000465514 MOV10L1Q9BXT6 1211 aaKnown RBP11.89□□□□□ -0.51
USP39-212ENST00000465514 FPGT-TNNI3KV9GXZ4 949 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 ROBO3Q96MS0 1386 aa11.89□□□□□ -0.51
USP39-212ENST00000465514 BAG3O95817 575 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 GH2P01242 217 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 MYOGP15173 224 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 ERCC3P19447 782 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 ACLYP53396 1101 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 RABGGTBP53611 331 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 ATP8B2P98198 1209 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 OS9Q13438 667 aaPredicted RBP11.88□□□□□ -0.51
USP39-212ENST00000465514 CCDC158Q5M9N0 1113 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 METTL16Q86W50 562 aaKnown RBP11.88□□□□□ -0.51
USP39-212ENST00000465514 MAPKAPK5Q8IW41 473 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 SSH3Q8TE77 659 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 DBNDD2Q9BQY9 259 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 PPP1R12CQ9BZL4 782 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 RPAP3Q9H6T3 665 aaPredicted RBP11.88□□□□□ -0.51
USP39-212ENST00000465514 CD320Q9NPF0 282 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 GPR108Q9NPR9 543 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 AATFQ9NY61 560 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP39-212ENST00000465514 SLC5A4Q9NY91 659 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 COG5Q9UP83 839 aa11.88□□□□□ -0.51
USP39-212ENST00000465514 FLT1P17948 1338 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 TRIOO75962 3097 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 ADAMTS4O75173 837 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 SURF6O75683 361 aaKnown RBP11.87□□□□□ -0.51
USP39-212ENST00000465514 CYP2E1P05181 493 aaPredicted RBP11.87□□□□□ -0.51
USP39-212ENST00000465514 PLCG2P16885 1265 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 USP14P54578 494 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 PPP4CP60510 307 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 KRT40Q6A162 431 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 ADGRA1Q86SQ6 560 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 TGFBRAP1Q8WUH2 860 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 NUP133Q8WUM0 1156 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 UIMC1Q96RL1 719 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 SPATC1LQ9H0A9 340 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 MTIF3Q9H2K0 278 aaKnown RBP11.87□□□□□ -0.51
USP39-212ENST00000465514 C1orf115Q9H7X2 142 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 PALD1Q9ULE6 856 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 MTCH2Q9Y6C9 303 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 MCM3APO60318 1980 aa11.87□□□□□ -0.51
USP39-212ENST00000465514 MROH7Q68CQ1 1323 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 SYNRGQ9UMZ2 1314 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 RFXAPO00287 272 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 GTPBP6O43824 516 aaPredicted RBP11.86□□□□□ -0.51
USP39-212ENST00000465514 TAL1P17542 331 aaPredicted RBP11.86□□□□□ -0.51
USP39-212ENST00000465514 FOXP4Q8IVH2 680 aaPredicted RBP11.86□□□□□ -0.51
USP39-212ENST00000465514 SHCBP1Q8NEM2 672 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 ACER1Q8TDN7 264 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 HLA-CQ95604 372 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 ZNF512BQ96KM6 892 aaPredicted RBP11.86□□□□□ -0.51
USP39-212ENST00000465514 TSEN34Q9BSV6 310 aaKnown RBP11.86□□□□□ -0.51
USP39-212ENST00000465514 KIAA1683Q9H0B3 1180 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 IL23AQ9NPF7 189 aa11.86□□□□□ -0.51
USP39-212ENST00000465514 SAP30BPQ9UHR5 308 aaKnown RBP11.86□□□□□ -0.51
USP39-212ENST00000465514 SPTBN4Q9H254 2564 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 CYP2C18P33260 490 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 ZAP70P43403 619 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 RAB3GAP1Q15042 981 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 OTOP2Q7RTS6 562 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 NCAPG2Q86XI2 1143 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 FBXL18Q96ME1 805 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 PIH1D3Q9NQM4 214 aaKnown RBP11.85□□□□□ -0.51
USP39-212ENST00000465514 NRBP1Q9UHY1 535 aa11.85□□□□□ -0.51
USP39-212ENST00000465514 NOP58Q9Y2X3 529 aaKnown RBP11.85□□□□□ -0.51
USP39-212ENST00000465514 MYH8P13535 1937 aa11.84□□□□□ -0.51
USP39-212ENST00000465514 MOXD2PA6NHM9 499 aa11.84□□□□□ -0.51
USP39-212ENST00000465514 FGBP02675 491 aa11.84□□□□□ -0.51
USP39-212ENST00000465514 AKR1A1P14550 325 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms