RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 KCNF1Q9H3M0 494 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 HEG1Q9ULI3 1381 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 LMO7Q8WWI1 1683 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF654Q8IZM8 581 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 DDX54Q8TDD1 881 aaKnown RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 NELFBQ8WX92 580 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 MAP3K14Q99558 947 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 LRRC2Q9BYS8 371 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 PNPLA7Q6ZV29 1317 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 DCCP43146 1447 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 MRPL12P52815 198 aaKnown RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 WDR78Q5VTH9 848 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 TTLL7Q6ZT98 887 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 MB21D2Q8IYB1 491 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 SPATA5Q8NB90 893 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 TRIM7Q9C029 511 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 RASGRP2Q7LDG7 609 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 CABS1Q96KC9 395 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 COPB1P53618 953 aaKnown RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 CCDC114Q96M63 670 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 FAM114A2Q9NRY5 505 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 CLGNO14967 610 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 LACTBP83111 547 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-216ENST00000461872 CPLX3Q8WVH0 158 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 HOMER3Q9NSC5 361 aa7.82□□□□□ -1.16
SYNE1-216ENST00000461872 SASH1O94885 1247 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 MAP2K2P36507 400 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ICE2Q659A1 982 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ABCF2Q9UG63 623 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 UTP11Q9Y3A2 253 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 TOPAZ1Q8N9V7 1692 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 SIGLEC1Q9BZZ2 1709 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 KIF4AO95239 1232 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 AFMP43652 599 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 MICALL1Q8N3F8 863 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 LARP6Q9BRS8 491 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 N4BP1O75113 896 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 CYP7A1P22680 504 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 PBKQ96KB5 322 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ANKRD27Q96NW4 1050 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ZSCAN10Q96SZ4 725 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 PARD6BQ9BYG5 372 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ATXN2Q99700 1313 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ATP5J2-PTCD1G3V325 749 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 PTCD1O75127 700 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 CALCOCO2Q13137 446 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 NONOQ15233 471 aaKnown RBP eCLIP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 EIF1ADQ8N9N8 165 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 WDR66Q8TBY9 1149 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 STAG1Q8WVM7 1258 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 IWS1Q96ST2 819 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 CENPHQ9H3R5 247 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ZBTB3Q9H5J0 574 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ATP8A2Q9NTI2 1148 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 NFAT5O94916 1531 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 HLA-DOAP06340 250 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 RFX1P22670 979 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 RNASELQ05823 741 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 CASP8Q14790 479 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 HS2ST1Q7LGA3 356 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 BRIP1Q9BX63 1249 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 STIM2Q9P246 746 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 SETDB1Q15047 1291 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 RIMBP3CA6NJZ7 1639 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 RIMBP3BA6NNM3 1639 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 RIMBP3Q9UFD9 1639 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 MYO1CO00159 1063 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 IRS4O14654 1257 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 GFPT2O94808 682 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 PDE8BO95263 885 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 NT5DC1Q5TFE4 455 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 CPLX4Q7Z7G2 160 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 MSANTD4Q8NCY6 345 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 BBOF1Q8ND07 529 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 NCOA5Q9HCD5 579 aaKnown RBP7.81□□□□□ -1.16
SYNE1-216ENST00000461872 MBD4O95243 580 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 ZNF804AQ7Z570 1209 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 TBC1D22AQ8WUA7 517 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 CTNND2Q9UQB3 1225 aa7.81□□□□□ -1.16
SYNE1-216ENST00000461872 RHOXF2BP0C7M4 288 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 SCG2P13521 617 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 PNOCQ13519 176 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 RHOXF2Q9BQY4 288 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 PSMD14O00487 310 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 CETN3O15182 167 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 RPS6KA5O75582 802 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 PPP1R18Q6NYC8 613 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 IPO4Q8TEX9 1081 aaKnown RBP7.8□□□□□ -1.16
SYNE1-216ENST00000461872 CALUO43852 315 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-216ENST00000461872 ADD2P35612 726 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 RNF187Q5TA31 235 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-216ENST00000461872 SFMBT2Q5VUG0 894 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 PPP1R1BQ9UD71 204 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-216ENST00000461872 TSPY3P0CV98 308 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 TSPY8P0CW00 308 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 PRLRP16471 622 aa7.8□□□□□ -1.16
SYNE1-216ENST00000461872 TADA2BQ86TJ2 420 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms