RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 COPB2P35606 906 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 CAP1Q01518 475 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 FAM83BQ5T0W9 1011 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 DGKHQ86XP1 1220 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 LRRC47Q8N1G4 583 aaKnown RBP13.97□□□□□ -0.17
VPS52-213ENST00000461743 DCAF4Q8WV16 495 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 COA7Q96BR5 231 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 ANP32EQ9BTT0 268 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 ARHGAP39Q9C0H5 1083 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 ANO2Q9NQ90 1003 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 RBPJLQ9UBG7 517 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 FEM1BQ9UK73 627 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 PPP1R9AQ9ULJ8 1098 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 ADAMTS5Q9UNA0 930 aa13.97□□□□□ -0.17
VPS52-213ENST00000461743 RBM8AQ9Y5S9 174 aaKnown RBP13.97□□□□□ -0.17
VPS52-213ENST00000461743 KIAA0100Q14667 2235 aaKnown RBP13.96□□□□□ -0.17
VPS52-213ENST00000461743 KDM4AO75164 1064 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 CNMDO75829 334 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 BMP3P12645 472 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 CTGFP29279 349 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 IRF5Q13568 498 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 SLFN13Q68D06 897 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 RCSD1Q6JBY9 416 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 SHCBP1Q8NEM2 672 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 SOCS4Q8WXH5 440 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 SLF1Q9BQI6 1058 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 PAGR1Q9BTK6 254 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 TXNRD2Q9NNW7 524 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 INCENPQ9NQS7 918 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 HPS5Q9UPZ3 1129 aa13.96□□□□□ -0.17
VPS52-213ENST00000461743 B4E1Z4 1266 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 EPB41L2O43491 1005 aaKnown RBP13.95□□□□□ -0.18
VPS52-213ENST00000461743 RAD21O60216 631 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 NMT2O60551 498 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 SLC1A4P43007 532 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 STAT2P52630 851 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 RNF20Q5VTR2 975 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 RALYLQ86SE5 291 aaKnown RBP13.95□□□□□ -0.18
VPS52-213ENST00000461743 FAM160B2Q86V87 743 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 PRPF38AQ8NAV1 312 aaKnown RBP13.95□□□□□ -0.18
VPS52-213ENST00000461743 NCOA7Q8NI08 942 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 ANKS1AQ92625 1134 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 ARMC5Q96C12 935 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 ATG4CQ96DT6 458 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 UBAC1Q9BSL1 405 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 MTA3Q9BTC8 594 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 SPATC1LQ9H0A9 340 aa13.95□□□□□ -0.18
VPS52-213ENST00000461743 TNKSO95271 1327 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 E7EWF7 191 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 REC8O95072 547 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 OAZ1P54368 228 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 SART3Q15020 963 aaKnown RBP13.94□□□□□ -0.18
VPS52-213ENST00000461743 CCAR1Q8IX12 1150 aaKnown RBP13.94□□□□□ -0.18
VPS52-213ENST00000461743 SLAIN1Q8ND83 568 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 RAET1EQ8TD07 263 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 CHURC1Q8WUH1 139 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 ZSCAN10Q96SZ4 725 aaPredicted RBP13.94□□□□□ -0.18
VPS52-213ENST00000461743 TMEM47Q9BQJ4 181 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 BTBD7Q9P203 1132 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 PTCH2Q9Y6C5 1203 aa13.94□□□□□ -0.18
VPS52-213ENST00000461743 SMCHD1A6NHR9 2005 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 VWA5AO00534 786 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 ATP2A1O14983 1001 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 SLC25A27O95847 323 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 SNHG28P0DPA3 235 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 PRKCZQ05513 592 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 NECTIN1Q15223 517 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 SLC9C1Q4G0N8 1177 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 POTEEQ6S8J3 1075 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 NBPF11Q86T75 865 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 ENAHQ8N8S7 591 aaPredicted RBP13.93□□□□□ -0.18
VPS52-213ENST00000461743 REPS2Q8NFH8 660 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 PXYLP1Q8TE99 480 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 NUP88Q99567 741 aaPredicted RBP13.93□□□□□ -0.18
VPS52-213ENST00000461743 MROH8Q9H579 483 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 CWC22Q9HCG8 908 aaKnown RBP13.93□□□□□ -0.18
VPS52-213ENST00000461743 FBXO28Q9NVF7 368 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 ZSWIM5Q9P217 1185 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 LCTP09848 1927 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 BRCA2P51587 3418 aa13.93□□□□□ -0.18
VPS52-213ENST00000461743 SLC27A2O14975 620 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 EIF5BO60841 1220 aaKnown RBP13.92□□□□□ -0.18
VPS52-213ENST00000461743 PDHBP11177 359 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 GPATCH4Q5T3I0 446 aaKnown RBP13.92□□□□□ -0.18
VPS52-213ENST00000461743 CREB3L3Q68CJ9 461 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 GPR142Q7Z601 462 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 PLEKHH3Q7Z736 793 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 RIOX2Q8IUF8 465 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 TRMT44Q8IYL2 757 aaKnown RBP13.92□□□□□ -0.18
VPS52-213ENST00000461743 ABRAQ8N0Z2 381 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 NUDT12Q9BQG2 462 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 TEX13BQ9BXU2 312 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 PORCNQ9H237 461 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 KAT14Q9H8E8 782 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 SLC38A10Q9HBR0 1119 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 ZNF214Q9UL59 606 aaPredicted RBP13.92□□□□□ -0.18
VPS52-213ENST00000461743 IVNS1ABPQ9Y6Y0 642 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 MCM3APO60318 1980 aa13.92□□□□□ -0.18
VPS52-213ENST00000461743 ERICH2A1L162 156 aa13.91□□□□□ -0.18
VPS52-213ENST00000461743 SLC15A5A6NIM6 579 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms