RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 GOLIM4O00461 696 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 POLR3DP05423 398 aaPredicted RBP10.51□□□□□ -0.73
HDAC9-220ENST00000461409 XRCC5P13010 732 aaKnown RBP10.51□□□□□ -0.73
HDAC9-220ENST00000461409 DNAJB2P25686 324 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 ERVK-9P63128 1117 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 ERVK-24P63145 666 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 SHROOM1Q2M3G4 852 aaPredicted RBP10.51□□□□□ -0.73
HDAC9-220ENST00000461409 ANKLE1Q8NAG6 615 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 DNAJC2Q99543 621 aaKnown RBP10.51□□□□□ -0.73
HDAC9-220ENST00000461409 NUDT12Q9BQG2 462 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 RIOK1Q9BRS2 568 aaKnown RBP10.51□□□□□ -0.73
HDAC9-220ENST00000461409 KIAA1683Q9H0B3 1180 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 RCAN3Q9UKA8 241 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 RANBP2P49792 3224 aaKnown RBP10.51□□□□□ -0.73
HDAC9-220ENST00000461409 RPTORQ8N122 1335 aa10.51□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L15C9J2P7 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L13C9JLJ4 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L11C9JVI0 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L18D6R9N7 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L22D6RA61 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L17D6RBQ6 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L19D6RCP7 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L20D6RJB6 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 RNF40O75150 1001 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 GLRX3O76003 335 aaKnown RBP10.5□□□□□ -0.73
HDAC9-220ENST00000461409 FECHP22830 423 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 CCNA1P78396 465 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 USP17L24Q0WX57 530 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 ZYXQ15942 572 aaKnown RBP10.5□□□□□ -0.73
HDAC9-220ENST00000461409 SIRT2Q8IXJ6 389 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 PAGR1Q9BTK6 254 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.5□□□□□ -0.73
HDAC9-220ENST00000461409 TMEM134Q9H6X4 195 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 CWC22Q9HCG8 908 aaKnown RBP10.5□□□□□ -0.73
HDAC9-220ENST00000461409 TXNRD2Q9NNW7 524 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 HMX1Q9NP08 348 aaPredicted RBP10.5□□□□□ -0.73
HDAC9-220ENST00000461409 MCM9Q9NXL9 1143 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 RBPJLQ9UBG7 517 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 MYO5AQ9Y4I1 1855 aaKnown RBP10.5□□□□□ -0.73
HDAC9-220ENST00000461409 ZNF532Q9HCE3 1301 aa10.5□□□□□ -0.73
HDAC9-220ENST00000461409 TCRBV5S4A2TA0A5A2 114 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 ZKSCAN1P17029 563 aaPredicted RBP10.49□□□□□ -0.73
HDAC9-220ENST00000461409 ATP5JP18859 108 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 VCAM1P19320 739 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 SHMT1P34896 483 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 RGS2P41220 211 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 FXR1P51114 621 aaKnown RBP eCLIP10.49□□□□□ -0.73
HDAC9-220ENST00000461409 PLCD1P51178 756 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 NECAB2Q7Z6G3 386 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 GPIHBP1Q8IV16 184 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 DDRGK1Q96HY6 314 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 PAG1Q9NWQ8 432 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 RABGAP1Q9Y3P9 1069 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 TRIOBPQ9H2D6 2365 aa10.49□□□□□ -0.73
HDAC9-220ENST00000461409 MYH1P12882 1939 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 RCCD1A6NED2 376 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 CYP2B6P20813 491 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 KCNC4Q03721 635 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 GABPAQ06546 454 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 MAP3K21Q5TCX8 1036 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 LBX2Q6XYB7 198 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 Q6ZNB5 142 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 CATSPERGQ6ZRH7 1159 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 GPR142Q7Z601 462 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 PLEKHH3Q7Z736 793 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 AMOTL1Q8IY63 956 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 TRIB2Q92519 343 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 APBA2Q99767 749 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 HAUS7Q99871 368 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 BCL11AQ9H165 835 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 DCP1AQ9NPI6 582 aaPredicted RBP10.48□□□□□ -0.73
HDAC9-220ENST00000461409 ATP8A2Q9NTI2 1148 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 SWAP70Q9UH65 585 aa10.48□□□□□ -0.73
HDAC9-220ENST00000461409 DDX60LQ5H9U9 1706 aaKnown RBP10.47□□□□□ -0.73
HDAC9-220ENST00000461409 MPHOSPH10O00566 681 aaKnown RBP10.47□□□□□ -0.73
HDAC9-220ENST00000461409 PEX10O60683 326 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 MBD4O95243 580 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 ADD2P35612 726 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 SEPT2Q15019 361 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 MORN1Q5T089 497 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 ZSCAN25Q6NSZ9 544 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 TMEM179Q6ZVK1 233 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 LCORLQ8N3X6 602 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 ACER1Q8TDN7 264 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 SDR42E1Q8WUS8 393 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 USP6NLQ92738 828 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 PAWRQ96IZ0 340 aaKnown RBP10.47□□□□□ -0.73
HDAC9-220ENST00000461409 LRRCC1Q9C099 1032 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 PORCNQ9H237 461 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 BOLA2Q9H3K6 86 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 RPAP3Q9H6T3 665 aaPredicted RBP10.47□□□□□ -0.73
HDAC9-220ENST00000461409 IVNS1ABPQ9Y6Y0 642 aa10.47□□□□□ -0.73
HDAC9-220ENST00000461409 DOCK3Q8IZD9 2030 aa10.46□□□□□ -0.73
HDAC9-220ENST00000461409 A0A1W2PPC1 479 aa10.46□□□□□ -0.73
HDAC9-220ENST00000461409 SLC15A5A6NIM6 579 aa10.46□□□□□ -0.73
HDAC9-220ENST00000461409 OATP04181 439 aa10.46□□□□□ -0.73
HDAC9-220ENST00000461409 GUCY1A2P33402 732 aa10.46□□□□□ -0.73
HDAC9-220ENST00000461409 TRIM32Q13049 653 aa10.46□□□□□ -0.73
HDAC9-220ENST00000461409 MAP2K5Q13163 448 aa10.46□□□□□ -0.73
HDAC9-220ENST00000461409 UBE3CQ15386 1083 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms