RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 TSPY2A6NKD2 308 aa27.26■■□□□ 1.95
PTPN4-208ENST00000460289 CAPN2P17655 700 aa27.26■■□□□ 1.95
PTPN4-208ENST00000460289 PTPREP23469 700 aa27.26■■□□□ 1.95
PTPN4-208ENST00000460289 SAMD1Q6SPF0 538 aaPredicted RBP27.26■■□□□ 1.95
PTPN4-208ENST00000460289 SHCBP1Q8NEM2 672 aa27.26■■□□□ 1.95
PTPN4-208ENST00000460289 STRNO43815 780 aa27.25■■□□□ 1.95
PTPN4-208ENST00000460289 ORC4O43929 436 aa27.25■■□□□ 1.95
PTPN4-208ENST00000460289 NDUFB10O96000 172 aa27.25■■□□□ 1.95
PTPN4-208ENST00000460289 FGRP09769 529 aa27.25■■□□□ 1.95
PTPN4-208ENST00000460289 MAP2K5Q13163 448 aa27.25■■□□□ 1.95
PTPN4-208ENST00000460289 TTC22Q5TAA0 569 aa27.25■■□□□ 1.95
PTPN4-208ENST00000460289 PPP1R9AQ9ULJ8 1098 aa27.25■■□□□ 1.95
PTPN4-208ENST00000460289 TNRC18O15417 2968 aaPredicted RBP27.25■■□□□ 1.95
PTPN4-208ENST00000460289 RANBP6O60518 1105 aaKnown RBP27.24■■□□□ 1.95
PTPN4-208ENST00000460289 PLS1Q14651 629 aa27.24■■□□□ 1.95
PTPN4-208ENST00000460289 GMCL1P1Q8NEA9 526 aa27.24■■□□□ 1.95
PTPN4-208ENST00000460289 TRIB2Q92519 343 aa27.24■■□□□ 1.95
PTPN4-208ENST00000460289 APBA2Q99767 749 aa27.24■■□□□ 1.95
PTPN4-208ENST00000460289 MROH8Q9H579 483 aa27.24■■□□□ 1.95
PTPN4-208ENST00000460289 INCENPQ9NQS7 918 aa27.24■■□□□ 1.95
PTPN4-208ENST00000460289 FBXO28Q9NVF7 368 aa27.24■■□□□ 1.95
PTPN4-208ENST00000460289 RPTORQ8N122 1335 aa27.23■■□□□ 1.95
PTPN4-208ENST00000460289 SGPL1O95470 568 aa27.23■■□□□ 1.95
PTPN4-208ENST00000460289 ZKSCAN1P17029 563 aaPredicted RBP27.23■■□□□ 1.95
PTPN4-208ENST00000460289 U2AF1L4Q8WU68 220 aaKnown RBP27.23■■□□□ 1.95
PTPN4-208ENST00000460289 SLF1Q9BQI6 1058 aa27.23■■□□□ 1.95
PTPN4-208ENST00000460289 PAK6Q9NQU5 681 aaPredicted RBP27.23■■□□□ 1.95
PTPN4-208ENST00000460289 TOMM22Q9NS69 142 aa27.23■■□□□ 1.95
PTPN4-208ENST00000460289 RLFQ13129 1914 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 VWA5AO00534 786 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 SLC25A27O95847 323 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 PCP11498 1178 aaKnown RBP27.22■■□□□ 1.95
PTPN4-208ENST00000460289 ERCC3P19447 782 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 GRB14Q14449 540 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 PRPF38AQ8NAV1 312 aaKnown RBP27.22■■□□□ 1.95
PTPN4-208ENST00000460289 NUP88Q99567 741 aaPredicted RBP27.22■■□□□ 1.95
PTPN4-208ENST00000460289 HMX1Q9NP08 348 aaPredicted RBP27.22■■□□□ 1.95
PTPN4-208ENST00000460289 STX8Q9UNK0 236 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 PLXNB2O15031 1838 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 BRCA2P51587 3418 aa27.22■■□□□ 1.95
PTPN4-208ENST00000460289 TMEM132BQ14DG7 1078 aa27.21■■□□□ 1.95
PTPN4-208ENST00000460289 NCAPG2Q86XI2 1143 aa27.21■■□□□ 1.95
PTPN4-208ENST00000460289 LRRC47Q8N1G4 583 aaKnown RBP27.21■■□□□ 1.95
PTPN4-208ENST00000460289 HOXC6P09630 235 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 GSPT1P15170 499 aaKnown RBP27.2■■□□□ 1.94
PTPN4-208ENST00000460289 SLFN13Q68D06 897 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 MFSD6Q6ZSS7 791 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 SHISA4Q96DD7 197 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 DEFB118Q96PH6 123 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.2■■□□□ 1.94
PTPN4-208ENST00000460289 RNF41Q9H4P4 317 aaPredicted RBP27.2■■□□□ 1.94
PTPN4-208ENST00000460289 IL17RBQ9NRM6 502 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 FEM1BQ9UK73 627 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 TACC3Q9Y6A5 838 aa27.2■■□□□ 1.94
PTPN4-208ENST00000460289 ZNF213O14771 459 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 TFRCP02786 760 aaKnown RBP27.19■■□□□ 1.94
PTPN4-208ENST00000460289 STAT3P40763 770 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 HAND2P61296 217 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 TRIM32Q13049 653 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 RRP12Q5JTH9 1297 aaKnown RBP27.19■■□□□ 1.94
PTPN4-208ENST00000460289 AKNAD1Q5T1N1 836 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 MAP3K21Q5TCX8 1036 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 DPP9Q86TI2 863 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 ABRAQ8N0Z2 381 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 DSCC1Q9BVC3 393 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 A0A0G2JMZ2 1700 aa27.19■■□□□ 1.94
PTPN4-208ENST00000460289 BMP3P12645 472 aa27.18■■□□□ 1.94
PTPN4-208ENST00000460289 PRKAR2AP13861 404 aaKnown RBP27.18■■□□□ 1.94
PTPN4-208ENST00000460289 COPB2P35606 906 aa27.18■■□□□ 1.94
PTPN4-208ENST00000460289 CCL14Q16627 93 aa27.18■■□□□ 1.94
PTPN4-208ENST00000460289 RIOX2Q8IUF8 465 aa27.18■■□□□ 1.94
PTPN4-208ENST00000460289 SLC5A4Q9NY91 659 aa27.18■■□□□ 1.94
PTPN4-208ENST00000460289 NMT2O60551 498 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 ZBED4O75132 1171 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 ADORA2AP29274 412 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 STAG1Q8WVM7 1258 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 GMCL1Q96IK5 515 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 TCP11L1Q9NUJ3 509 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 CTNNA3Q9UI47 895 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 CTDP1Q9Y5B0 961 aaPredicted RBP27.17■■□□□ 1.94
PTPN4-208ENST00000460289 MYH4Q9Y623 1939 aa27.17■■□□□ 1.94
PTPN4-208ENST00000460289 PDE4DIPQ5VU43 2346 aa27.16■■□□□ 1.94
PTPN4-208ENST00000460289 FCER1AP12319 257 aa27.16■■□□□ 1.94
PTPN4-208ENST00000460289 NOVP48745 357 aa27.16■■□□□ 1.94
PTPN4-208ENST00000460289 NT5C2P49902 561 aa27.16■■□□□ 1.94
PTPN4-208ENST00000460289 CACNB2Q08289 660 aaPredicted RBP27.16■■□□□ 1.94
PTPN4-208ENST00000460289 MFSD14CQ5VZR4 134 aa27.16■■□□□ 1.94
PTPN4-208ENST00000460289 REPS2Q8NFH8 660 aa27.16■■□□□ 1.94
PTPN4-208ENST00000460289 RUFY2Q8WXA3 655 aa27.16■■□□□ 1.94
PTPN4-208ENST00000460289 ZNF214Q9UL59 606 aaPredicted RBP27.16■■□□□ 1.94
PTPN4-208ENST00000460289 SLC1A4P43007 532 aa27.15■■□□□ 1.94
PTPN4-208ENST00000460289 CHURC1Q8WUH1 139 aa27.15■■□□□ 1.94
PTPN4-208ENST00000460289 KIFC2Q96AC6 838 aa27.15■■□□□ 1.94
PTPN4-208ENST00000460289 TEX13BQ9BXU2 312 aa27.15■■□□□ 1.94
PTPN4-208ENST00000460289 CRISPLD2Q9H0B8 497 aa27.15■■□□□ 1.94
PTPN4-208ENST00000460289 PARP14Q460N5 1801 aa27.15■■□□□ 1.94
PTPN4-208ENST00000460289 FDX1P10109 184 aa27.14■■□□□ 1.94
PTPN4-208ENST00000460289 MCCP23508 829 aa27.14■■□□□ 1.94
PTPN4-208ENST00000460289 NPLOC4Q8TAT6 608 aa27.14■■□□□ 1.94
PTPN4-208ENST00000460289 NBPF3Q9H094 633 aa27.14■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms