RNA–Protein interactions for RNA: ENST00000458034.1

RFX3-211, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-211ENST00000458034 AFMP43652 599 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 USP5P45974 858 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 PTGDRQ13258 359 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 CUL4BQ13620 913 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 TRIM14Q14142 442 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 ELF2Q15723 593 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 ZNF827Q17R98 1081 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 TMEM139Q8IV31 216 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 REXO1L1PQ8IX06 675 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 TRMT44Q8IYL2 757 aaKnown RBP12.4□□□□□ -0.42
RFX3-211ENST00000458034 GRAMD1CQ8IYS0 662 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 LZTS2Q9BRK4 669 aa12.4□□□□□ -0.42
RFX3-211ENST00000458034 DDX41Q9UJV9 622 aaKnown RBP12.4□□□□□ -0.42
RFX3-211ENST00000458034 ITIH6Q6UXX5 1313 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 FAM205CA6NFA0 338 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 NPHP1O15259 732 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 LDHBP07195 334 aaKnown RBP12.39□□□□□ -0.43
RFX3-211ENST00000458034 GABPB1Q06547 395 aaPredicted RBP12.39□□□□□ -0.43
RFX3-211ENST00000458034 GRM4Q14833 912 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 VPS72Q15906 364 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 CDKAL1Q5VV42 579 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 PIK3AP1Q6ZUJ8 805 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 USP49Q70CQ1 688 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 CNGA4Q8IV77 575 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 BLIDQ8IZY5 108 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 TC2NQ8N9U0 490 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 ZNF384Q8TF68 577 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 SHISA4Q96DD7 197 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 EPSTI1Q96J88 318 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 ZMYND15Q9H091 742 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 TCP11L1Q9NUJ3 509 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 MCM9Q9NXL9 1143 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 TFCP2L1Q9NZI6 479 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 PCDHA4Q9UN74 947 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 RTCBQ9Y3I0 505 aaKnown RBP12.39□□□□□ -0.43
RFX3-211ENST00000458034 LY75O60449 1722 aa12.39□□□□□ -0.43
RFX3-211ENST00000458034 CDK5RAP2Q96SN8 1893 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 LAD1O00515 517 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 ATMINO43313 823 aaPredicted RBP12.38□□□□□ -0.43
RFX3-211ENST00000458034 URI1O94763 535 aaPredicted RBP12.38□□□□□ -0.43
RFX3-211ENST00000458034 MYL1P05976 194 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 CCDC175P0C221 793 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 DMTNQ08495 405 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 TUBB2AQ13885 445 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 NPY5RQ15761 445 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 EARS2Q5JPH6 523 aaKnown RBP12.38□□□□□ -0.43
RFX3-211ENST00000458034 FAM47AQ5JRC9 791 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 C12orf60Q5U649 245 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 TRIM65Q6PJ69 517 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 ZNF804AQ7Z570 1209 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 KRT222Q8N1A0 295 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 DAGLBQ8NCG7 672 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 UBXN4Q92575 508 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 CCDC47Q96A33 483 aaKnown RBP12.38□□□□□ -0.43
RFX3-211ENST00000458034 MS4A3Q96HJ5 214 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 TUBB2BQ9BVA1 445 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 MAGEF1Q9HAY2 307 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 SAMSN1Q9NSI8 373 aaKnown RBP12.38□□□□□ -0.43
RFX3-211ENST00000458034 RWDD2AQ9UIY3 292 aa12.38□□□□□ -0.43
RFX3-211ENST00000458034 TNRC6CQ9HCJ0 1690 aaKnown RBP12.38□□□□□ -0.43
RFX3-211ENST00000458034 MYH8P13535 1937 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 A0A087X0B3 334 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 CCDC194A0A1B0GVG4 234 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 hCG_1642624A0A1W2PR95 340 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 SPDYE4A6NLX3 237 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 EFCAB8A8MWE9 144 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 PPP1R3GB7ZBB8 358 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 GNPATO15228 680 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 CYP2D6P10635 497 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 C7P10643 843 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 PRDX5P30044 214 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 MCM7P33993 719 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 PPP4CP60510 307 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 TFAP4Q01664 338 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 PAK1Q13153 545 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 STIM1Q13586 685 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 BMS1Q14692 1282 aaKnown RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 NAA30Q147X3 362 aaPredicted RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 E2F4Q16254 413 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 FAM98CQ17RN3 349 aaKnown RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 ZNF658Q5TYW1 1059 aaPredicted RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 RRAGBQ5VZM2 374 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 KLHL10Q6JEL2 608 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 PDXDC2PQ6P474 469 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 C15orf52Q6ZUT6 534 aaKnown RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 ZNF444Q8N0Y2 327 aaPredicted RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 IGSF22Q8N9C0 903 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 PNMA1Q8ND90 353 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 CCDC12Q8WUD4 166 aaPredicted RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 SLC39A7Q92504 469 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 MKNK2Q9HBH9 465 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 ADD3Q9UEY8 706 aaKnown RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 LIMA1Q9UHB6 759 aaKnown RBP12.37□□□□□ -0.43
RFX3-211ENST00000458034 CTNND2Q9UQB3 1225 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 XDHP47989 1333 aa12.37□□□□□ -0.43
RFX3-211ENST00000458034 MFAP3LO75121 409 aa12.36□□□□□ -0.43
RFX3-211ENST00000458034 RPN1P04843 607 aaKnown RBP12.36□□□□□ -0.43
RFX3-211ENST00000458034 H2AFXP16104 143 aaPredicted RBP12.36□□□□□ -0.43
RFX3-211ENST00000458034 PLCG2P16885 1265 aa12.36□□□□□ -0.43
RFX3-211ENST00000458034 KLRK1P26718 216 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms