RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 CCDC194A0A1B0GVG4 234 aa13.44□□□□□ -0.26
VTA1-203ENST00000452973 SMTNL1A8MU46 457 aa13.44□□□□□ -0.26
VTA1-203ENST00000452973 H0YIN7 160 aa13.44□□□□□ -0.26
VTA1-203ENST00000452973 BMP6P22004 513 aa13.44□□□□□ -0.26
VTA1-203ENST00000452973 FLAD1Q8NFF5 587 aa13.44□□□□□ -0.26
VTA1-203ENST00000452973 SMARCE1Q969G3 411 aa13.44□□□□□ -0.26
VTA1-203ENST00000452973 MRFAP1L1Q96HT8 127 aa13.44□□□□□ -0.26
VTA1-203ENST00000452973 FAM196BA6NMK8 535 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 USP17L5A8MUK1 530 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 AKR1B1P15121 316 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 CALML3P27482 149 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 MDM2Q00987 491 aaPredicted RBP13.43□□□□□ -0.26
VTA1-203ENST00000452973 EN1Q05925 392 aaPredicted RBP13.43□□□□□ -0.26
VTA1-203ENST00000452973 NFIAQ12857 509 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 NCAPHQ15003 741 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 ZNF579Q8NAF0 562 aaKnown RBP13.43□□□□□ -0.26
VTA1-203ENST00000452973 ANKS1AQ92625 1134 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 TCP11L1Q9NUJ3 509 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 ZBTB22O15209 634 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 NAPAP54920 295 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 INF2Q27J81 1249 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 TRMT44Q8IYL2 757 aaKnown RBP13.43□□□□□ -0.26
VTA1-203ENST00000452973 TEKT1Q969V4 418 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 MAN1B1Q9UKM7 699 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 PCDHA4Q9UN74 947 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 NAV1Q8NEY1 1877 aa13.43□□□□□ -0.26
VTA1-203ENST00000452973 PALM3A6NDB9 673 aaPredicted RBP13.42□□□□□ -0.26
VTA1-203ENST00000452973 SERPINC1P01008 464 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 TMC6Q7Z403 805 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 FANCLQ9NW38 375 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 SNED1Q8TER0 1413 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 ANKRD31Q8N7Z5 1873 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 ACTN4O43707 911 aaKnown RBP13.42□□□□□ -0.26
VTA1-203ENST00000452973 EZH2Q15910 746 aaKnown RBP13.42□□□□□ -0.26
VTA1-203ENST00000452973 KLHL10Q6JEL2 608 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 CDC42EP5Q6NZY7 148 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 ZSCAN29Q8IWY8 852 aaPredicted RBP13.42□□□□□ -0.26
VTA1-203ENST00000452973 GPCPD1Q9NPB8 672 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 IGSF3O75054 1194 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 TOP1P11387 765 aaKnown RBP13.42□□□□□ -0.26
VTA1-203ENST00000452973 MYL5Q02045 173 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 ZFPM1Q8IX07 1006 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 FERMT2Q96AC1 680 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 PIGSQ96S52 555 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 BPIFA3Q9BQP9 254 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 SERPINB13Q9UIV8 391 aa13.42□□□□□ -0.26
VTA1-203ENST00000452973 HMGB2P26583 209 aaKnown RBP13.41□□□□□ -0.26
VTA1-203ENST00000452973 ATP2C1P98194 919 aaPredicted RBP13.41□□□□□ -0.26
VTA1-203ENST00000452973 FANCCQ00597 558 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 RASSF8Q8NHQ8 419 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 SEC63Q9UGP8 760 aaKnown RBP13.41□□□□□ -0.26
VTA1-203ENST00000452973 DLEC1Q9Y238 1755 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 CDC25BP30305 580 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 IL17AQ16552 155 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 CFAP100Q494V2 611 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 LRRC8AQ8IWT6 810 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 SMYD4Q8IYR2 804 aaPredicted RBP13.41□□□□□ -0.26
VTA1-203ENST00000452973 PLIN2Q99541 437 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 PDGFDQ9GZP0 370 aaPredicted RBP13.41□□□□□ -0.26
VTA1-203ENST00000452973 BLZF1Q9H2G9 400 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 BARHL2Q9NY43 387 aa13.41□□□□□ -0.26
VTA1-203ENST00000452973 STXBP3O00186 592 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 BMP15O95972 392 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 CRKP46108 304 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 AOC3Q16853 763 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 APOBEC3HQ6NTF7 200 aaKnown RBP13.4□□□□□ -0.26
VTA1-203ENST00000452973 RRP36Q96EU6 259 aaKnown RBP13.4□□□□□ -0.26
VTA1-203ENST00000452973 PCDHA6Q9UN73 950 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 PCDHA8Q9Y5H6 950 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 CCDC148Q8NFR7 591 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 DPF2Q92785 391 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 C16orf45Q96MC5 204 aaPredicted RBP13.4□□□□□ -0.26
VTA1-203ENST00000452973 MTMR4Q9NYA4 1195 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 MYH1P12882 1939 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 SMCO2A6NFE2 343 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 ECE2O60344 883 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 COBLO75128 1261 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 CDK11BP21127 795 aaKnown RBP13.4□□□□□ -0.26
VTA1-203ENST00000452973 UBASH3AP57075 661 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 HSD3B7Q9H2F3 369 aa13.4□□□□□ -0.26
VTA1-203ENST00000452973 PP2D1A8MPX8 630 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 IKBKBO14920 756 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 SKILP12757 684 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 STX17P56962 302 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 FMR1Q06787 632 aaKnown RBP eCLIP13.39□□□□□ -0.27
VTA1-203ENST00000452973 SOGA3Q5TF21 947 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 KANK3Q6NY19 840 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 COA7Q96BR5 231 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 PAGE5Q96GU1 130 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 CCDC34Q96HJ3 373 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 OSBPL5Q9H0X9 879 aaPredicted RBP13.39□□□□□ -0.27
VTA1-203ENST00000452973 SH3GLB2Q9NR46 395 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 BIN2Q9UBW5 565 aaPredicted RBP13.39□□□□□ -0.27
VTA1-203ENST00000452973 DDX60LQ5H9U9 1706 aaKnown RBP13.39□□□□□ -0.27
VTA1-203ENST00000452973 SLFN14P0C7P3 912 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 SHROOM1Q2M3G4 852 aaPredicted RBP13.39□□□□□ -0.27
VTA1-203ENST00000452973 LETM2Q2VYF4 491 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 JAKMIP3Q5VZ66 844 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 PODNQ7Z5L7 613 aa13.39□□□□□ -0.27
VTA1-203ENST00000452973 CDK5RAP2Q96SN8 1893 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms