RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 ELP1O95163 1332 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 PLCD1P51178 756 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 NAPAP54920 295 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 DHX9Q08211 1270 aaKnown RBP9.78□□□□□ -0.84
NIPBL-202ENST00000448238 PTK2BQ14289 1009 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 MPRIPQ6WCQ1 1025 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 SIKE1Q9BRV8 207 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 ASPSCR1Q9BZE9 553 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 DONSONQ9NYP3 566 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 TOMM70O94826 608 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 BBS5Q8N3I7 341 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 RNF217Q8TC41 542 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 ARHGEF1Q92888 912 aaKnown RBP9.78□□□□□ -0.84
NIPBL-202ENST00000448238 CROCCQ5TZA2 2017 aa9.78□□□□□ -0.84
NIPBL-202ENST00000448238 PPARGP37231 505 aaPredicted RBP9.77□□□□□ -0.84
NIPBL-202ENST00000448238 NDUFA5Q16718 116 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 NBPF20Q3BBV1 942 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 DEPDC1Q5TB30 811 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 RINT1Q6NUQ1 792 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 AMFRQ9UKV5 643 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 AK9Q5TCS8 1911 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 TRAF5O00463 557 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 TRIM37O94972 964 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 MYL5Q02045 173 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 ARMC2Q8NEN0 867 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 TRIM58Q8NG06 486 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 TADA1Q96BN2 335 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 CNBD2Q96M20 576 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 IFNKQ9P0W0 207 aa9.77□□□□□ -0.84
NIPBL-202ENST00000448238 RTL9Q8NET4 1388 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 SPTLC2O15270 562 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 KRT81Q14533 505 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 HAUS3Q68CZ6 603 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 KIF17Q9P2E2 1029 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 SV2BQ7L1I2 683 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 RWDD3Q9Y3V2 267 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 PLEKHH2Q8IVE3 1493 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 ATP5HO75947 161 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 RCSD1Q6JBY9 416 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 MTRQ99707 1265 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 TRIM31Q9BZY9 425 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 IL1RAPL2Q9NP60 686 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 ANKRD12Q6UB98 2062 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 ADCY3O60266 1144 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 PPP4R4Q6NUP7 873 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 KLC3Q6P597 504 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 RAPH1Q70E73 1250 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 SPINK5Q9NQ38 1064 aaPredicted RBP9.77□□□□□ -0.85
NIPBL-202ENST00000448238 ARHGEF3Q9NR81 526 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 ATG3Q9NT62 314 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 SEPT3Q9UH03 358 aa9.77□□□□□ -0.85
NIPBL-202ENST00000448238 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.76□□□□□ -0.85
NIPBL-202ENST00000448238 CYTH1Q15438 398 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 HADHQ16836 314 aaKnown RBP9.76□□□□□ -0.85
NIPBL-202ENST00000448238 IGSF22Q8N9C0 903 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 H7C0S8 307 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 E2F6O75461 281 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 SSFA2P28290 1259 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 NSFP46459 744 aaKnown RBP9.76□□□□□ -0.85
NIPBL-202ENST00000448238 ARHGEF18Q6ZSZ5 1173 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 ANKRD42Q8N9B4 389 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 PARVGQ9HBI0 331 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 SYBUQ9NX95 663 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 NUGGCQ68CJ6 796 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 NPHP3Q7Z494 1330 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 EIF2S1P05198 315 aaKnown RBP9.76□□□□□ -0.85
NIPBL-202ENST00000448238 ZNF530Q6P9A1 599 aaPredicted RBP9.76□□□□□ -0.85
NIPBL-202ENST00000448238 C16orf62Q7Z3J2 963 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.76□□□□□ -0.852e-8■■■■■ 72.2
NIPBL-202ENST00000448238 FRMD3A2A2Y4 597 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 BACH1O14867 736 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 GNA14O95837 355 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 ATAD3BQ5T9A4 648 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 POTEEQ6S8J3 1075 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 CNOT10Q9H9A5 744 aaKnown RBP9.76□□□□□ -0.85
NIPBL-202ENST00000448238 AIPL1Q9NZN9 384 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 GNGT1P63211 74 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 TOM1L2Q6ZVM7 507 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 TBC1D23Q9NUY8 699 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 ZNF711Q9Y462 761 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 U2AF2P26368 475 aaKnown RBP eCLIP9.76□□□□□ -0.858e-9■■□□□ 12
NIPBL-202ENST00000448238 RCN2Q14257 317 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 MYSM1Q5VVJ2 828 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 CEP85Q6P2H3 762 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 ATP8A1Q9Y2Q0 1164 aa9.76□□□□□ -0.85
NIPBL-202ENST00000448238 HSPA1AP0DMV8 641 aaKnown RBP9.75□□□□□ -0.85
NIPBL-202ENST00000448238 HSPA1BP0DMV9 641 aaKnown RBP9.75□□□□□ -0.85
NIPBL-202ENST00000448238 SNX29Q8TEQ0 813 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 ZNF692Q9BU19 519 aaPredicted RBP9.75□□□□□ -0.85
NIPBL-202ENST00000448238 TBC1D2Q9BYX2 928 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 NOD1Q9Y239 953 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 PARD3BQ8TEW8 1205 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 QKIQ96PU8 341 aaKnown RBP eCLIP9.75□□□□□ -0.853e-7■■■■■ 27
NIPBL-202ENST00000448238 SH3GL1Q99961 368 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 PDCD10Q9BUL8 212 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.75□□□□□ -0.85
NIPBL-202ENST00000448238 NDEL1Q9GZM8 345 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 IRAK4Q9NWZ3 460 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 SAR1BQ9Y6B6 198 aa9.75□□□□□ -0.85
NIPBL-202ENST00000448238 SPAG7O75391 227 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms