RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 SCO2A0A1W2PP80 73 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 MEGF11A6BM72 1044 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 RAB6AP20340 208 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 PRSS36Q5K4E3 855 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 Q6ZS46 218 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 BEND4Q6ZU67 534 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 COG3Q96JB2 828 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 MYRFLQ96LU7 910 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 TRIM56Q9BRZ2 755 aaKnown RBP8.1□□□□□ -1.11
USP49-205ENST00000448078 EMILIN2Q9BXX0 1053 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 TMPRSS13Q9BYE2 586 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 NMRK2Q9NPI5 230 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 PICK1Q9NRD5 415 aa8.1□□□□□ -1.11
USP49-205ENST00000448078 ABCC6O95255 1503 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 NHSQ6T4R5 1651 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 ECEL1O95672 775 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 SLFN14P0C7P3 912 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 ERCC3P19447 782 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 TMF1P82094 1093 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 COL19A1Q14993 1142 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 NFKBIBQ15653 356 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 C9orf131Q5VYM1 1079 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 MAP1SQ66K74 1059 aaPredicted RBP8.09□□□□□ -1.11
USP49-205ENST00000448078 SMG8Q8ND04 991 aaKnown RBP8.09□□□□□ -1.11
USP49-205ENST00000448078 PIM2Q9P1W9 311 aa8.09□□□□□ -1.11
USP49-205ENST00000448078 USP31Q70CQ4 1352 aa8.09□□□□□ -1.12
USP49-205ENST00000448078 A0A0G2JLW4 131 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 TM4SF5O14894 197 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 DLGAP3O95886 979 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 GSTP1P09211 210 aaKnown RBP8.08□□□□□ -1.12
USP49-205ENST00000448078 MMP10P09238 476 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 VEGFAP15692 232 aaPredicted RBP8.08□□□□□ -1.12
USP49-205ENST00000448078 LIG1P18858 919 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 DALRD3Q5D0E6 543 aaKnown RBP8.08□□□□□ -1.12
USP49-205ENST00000448078 NME9Q86XW9 330 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 FAM20CQ8IXL6 584 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 FAM46AQ96IP4 442 aaKnown RBP8.08□□□□□ -1.12
USP49-205ENST00000448078 PIDD1Q9HB75 910 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 PARP2Q9UGN5 583 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 PPM1HQ9ULR3 514 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 PLEKHG2Q9H7P9 1386 aa8.08□□□□□ -1.12
USP49-205ENST00000448078 HSPA1AP0DMV8 641 aaKnown RBP8.07□□□□□ -1.12
USP49-205ENST00000448078 HSPA1BP0DMV9 641 aaKnown RBP8.07□□□□□ -1.12
USP49-205ENST00000448078 ADH5P11766 374 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 FSTP19883 344 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 MAP4P27816 1152 aaKnown RBP8.07□□□□□ -1.12
USP49-205ENST00000448078 RFC4P35249 363 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 SOX4Q06945 474 aaPredicted RBP8.07□□□□□ -1.12
USP49-205ENST00000448078 SGO2Q562F6 1265 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 ZMYM1Q5SVZ6 1142 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.07□□□□□ -1.12
USP49-205ENST00000448078 NPAS4Q8IUM7 802 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 GIMAP7Q8NHV1 300 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 BCL2L13Q9BXK5 485 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 SSU72Q9NP77 194 aaKnown RBP8.07□□□□□ -1.12
USP49-205ENST00000448078 VTI1BQ9UEU0 232 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 HIF3AQ9Y2N7 669 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 RAB3GAP2Q9H2M9 1393 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 TRPM1Q7Z4N2 1603 aa8.07□□□□□ -1.12
USP49-205ENST00000448078 PCDH11XQ9BZA7 1347 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 PCDH11YQ9BZA8 1340 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 BTAF1O14981 1849 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 HMX2A2RU54 273 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 GSC2O15499 205 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 RNGTTO60942 597 aaKnown RBP8.06□□□□□ -1.12
USP49-205ENST00000448078 AOC2O75106 756 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 CTSBP07858 339 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 NME2P22392 152 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 ARNTP27540 789 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 ASPAP45381 313 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 HTRA3P83110 453 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 CCDC85BQ15834 202 aaPredicted RBP8.06□□□□□ -1.12
USP49-205ENST00000448078 PAOXQ6QHF9 649 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 DNAJC14Q6Y2X3 702 aaPredicted RBP8.06□□□□□ -1.12
USP49-205ENST00000448078 CLEC10AQ8IUN9 316 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 TRIM42Q8IWZ5 723 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 ARMC10Q8N2F6 343 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 FBXL6Q8N531 539 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 FBLIM1Q8WUP2 373 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 C7orf69Q9H7B7 122 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 SUGCTQ9HAC7 445 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 RNF181Q9P0P0 153 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 COL18A1P39060 1754 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 PALLDQ8WX93 1383 aa8.06□□□□□ -1.12
USP49-205ENST00000448078 ARHGEF28Q8N1W1 1705 aaKnown RBP8.06□□□□□ -1.12
USP49-205ENST00000448078 PAPPAQ13219 1627 aa8.05□□□□□ -1.12
USP49-205ENST00000448078 FAM95CA0A1B0GW59 222 aa8.05□□□□□ -1.12
USP49-205ENST00000448078 DPEP1P16444 411 aa8.05□□□□□ -1.12
USP49-205ENST00000448078 LRRC14Q15048 493 aa8.05□□□□□ -1.12
USP49-205ENST00000448078 FAM161BQ96MY7 647 aa8.05□□□□□ -1.12
USP49-205ENST00000448078 CCDC86Q9H6F5 360 aaKnown RBP8.05□□□□□ -1.12
USP49-205ENST00000448078 LGR6Q9HBX8 967 aa8.05□□□□□ -1.12
USP49-205ENST00000448078 AK5Q9Y6K8 562 aa8.05□□□□□ -1.12
USP49-205ENST00000448078 SMG6Q86US8 1419 aaKnown RBP8.04□□□□□ -1.12
USP49-205ENST00000448078 HOXC9P31274 260 aa8.04□□□□□ -1.12
USP49-205ENST00000448078 MAP3K11Q16584 847 aa8.04□□□□□ -1.12
USP49-205ENST00000448078 DIEXFQ68CQ4 756 aaKnown RBP8.04□□□□□ -1.12
USP49-205ENST00000448078 C3orf58Q8NDZ4 430 aa8.04□□□□□ -1.12
USP49-205ENST00000448078 NECAB3Q96P71 396 aaPredicted RBP8.04□□□□□ -1.12
USP49-205ENST00000448078 NRSN2Q9GZP1 204 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms