RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ATP8B1O43520 1251 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 PLEKHA8P1O95397 391 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 FGRP09769 529 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 SLC15A2Q16348 729 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 MSL1Q68DK7 614 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 CATIPQ7Z7H3 387 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 BRIP1Q9BX63 1249 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 MRPL44Q9H9J2 332 aaKnown RBP18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 ADD3Q9UEY8 706 aaKnown RBP18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 WNT7AO00755 349 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 PRDM1O75626 825 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 CCDC175P0C221 793 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 AFMP43652 599 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 SF3B2Q13435 895 aaKnown RBP18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 MTF1Q14872 753 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 NPY5RQ15761 445 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 IFIT1BQ5T764 474 aaKnown RBP18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 DEFB132Q7Z7B7 95 aa18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 GPR161Q8N6U8 529 aaKnown RBP18.61■□□□□ 0.57
CLCNKA-203ENST00000439316 BAZ2AQ9UIF9 1905 aaKnown RBP18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 SOWAHDA6NJG2 315 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 PPP1R3GB7ZBB8 358 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 MMP10P09238 476 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 CALM1P0DP23 149 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 CALM2P0DP24 149 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 CALM3P0DP25 149 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 PCP11498 1178 aaKnown RBP18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 TROAPQ12815 778 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 SLC51AQ86UW1 340 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 IGSF22Q8N9C0 903 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 CTAGE1Q96RT6 745 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 BRMS1Q9HCU9 246 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 ABCF2Q9UG63 623 aa18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 IQSEC3Q9UPP2 1182 aaPredicted RBP18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 V9GY48 417 aaPredicted RBP18.6■□□□□ 0.57
CLCNKA-203ENST00000439316 CNTNAP5Q8WYK1 1306 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 DDAH1O94760 285 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 GYG1P46976 350 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 RBL2Q08999 1139 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 KARSQ15046 597 aaKnown RBP18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 KLHL10Q6JEL2 608 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 TMTC3Q6ZXV5 915 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 ANKRD2Q9GZV1 360 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 STK32BQ9NY57 414 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 ANKRD31Q8N7Z5 1873 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 hCG_1642624A0A1W2PR95 340 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 FECHP22830 423 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 CASP1P29466 404 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 BAG6P46379 1132 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 STX17P56962 302 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 ATP2C1P98194 919 aaPredicted RBP18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 TTC38Q5R3I4 469 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 RAD9BQ6WBX8 426 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 PPFIBP1Q86W92 1011 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 GNL3LQ9NVN8 582 aaKnown RBP18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 ADGRG1Q9Y653 693 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 NRXN2Q9P2S2 1712 aa18.59■□□□□ 0.57
CLCNKA-203ENST00000439316 ITIH6Q6UXX5 1313 aa18.58■□□□□ 0.56
CLCNKA-203ENST00000439316 MFAP3LO75121 409 aa18.58■□□□□ 0.56
CLCNKA-203ENST00000439316 TAF3Q5VWG9 929 aa18.58■□□□□ 0.56
CLCNKA-203ENST00000439316 CC2D1AQ6P1N0 951 aaPredicted RBP18.58■□□□□ 0.56
CLCNKA-203ENST00000439316 IQCA1Q86XH1 822 aa18.58■□□□□ 0.56
CLCNKA-203ENST00000439316 RABGGTAQ92696 567 aa18.58■□□□□ 0.56
CLCNKA-203ENST00000439316 UBXN6Q9BZV1 441 aa18.58■□□□□ 0.56
CLCNKA-203ENST00000439316 CYP2D7A0A087X1C5 515 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 SEC31AO94979 1220 aaKnown RBP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 DYNLL1P63167 89 aaKnown RBP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 ZNF174Q15697 407 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 E2F4Q16254 413 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 NOM1Q5C9Z4 860 aaKnown RBP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 CCDC12Q8WUD4 166 aaPredicted RBP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 RBM17Q96I25 401 aaKnown RBP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 LAMB1P07942 1786 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 XDHP47989 1333 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 KLRG2A4D1S0 409 aaPredicted RBP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 KLRK1P26718 216 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 FILIP1LQ4L180 1135 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 TEX35Q5T0J7 233 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 SMYD4Q8IYR2 804 aaPredicted RBP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 GOLGA1Q92805 767 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 EPC1Q9H2F5 836 aa18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLCNKA-203ENST00000439316 TBC1D8O95759 1140 aa18.56■□□□□ 0.56
CLCNKA-203ENST00000439316 CAVIN4Q5BKX8 364 aa18.56■□□□□ 0.56
CLCNKA-203ENST00000439316 ZNF384Q8TF68 577 aa18.56■□□□□ 0.56
CLCNKA-203ENST00000439316 CCDC51Q96ER9 411 aa18.56■□□□□ 0.56
CLCNKA-203ENST00000439316 FAM84BQ96KN1 310 aaPredicted RBP18.56■□□□□ 0.56
CLCNKA-203ENST00000439316 ANKIB1Q9P2G1 1089 aa18.56■□□□□ 0.56
CLCNKA-203ENST00000439316 GOLGB1Q14789 3259 aaKnown RBP18.56■□□□□ 0.56
CLCNKA-203ENST00000439316 HOXA10P31260 410 aaPredicted RBP18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 TRAPPC10P48553 1259 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 PTGDRQ13258 359 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 CTR9Q6PD62 1173 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 RASGRP2Q7LDG7 609 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 CNGA4Q8IV77 575 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 CTNND2Q9UQB3 1225 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 ORC4O43929 436 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 SASH3O75995 380 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 GYPCP04921 128 aa18.55■□□□□ 0.56
CLCNKA-203ENST00000439316 PDXDC2PQ6P474 469 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms