RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NOL8Q76FK4 1167 aaKnown RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 C12orf40Q86WS4 652 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 AFAP1Q8N556 730 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 CHAC2Q8WUX2 184 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 EDARADDQ8WWZ3 215 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 KISS1RQ969F8 398 aaPredicted RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 WDR89Q96FK6 387 aaPredicted RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 IPO9Q96P70 1041 aaKnown RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 CARD10Q9BWT7 1032 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 TMPRSS13Q9BYE2 586 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 CAAP1Q9H8G2 361 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 SUGCTQ9HAC7 445 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 PICK1Q9NRD5 415 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 RAD18Q9NS91 495 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 KLHL42Q9P2K6 505 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 TJP2Q9UDY2 1190 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 CD2APQ9Y5K6 639 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 FAM135AQ9P2D6 1515 aa5.57□□□□□ -1.52
HMGB3-203ENST00000430118 TROQ12816 1431 aaPredicted RBP5.57□□□□□ -1.52
HMGB3-203ENST00000430118 DNMT1P26358 1616 aaKnown RBP5.56□□□□□ -1.52
HMGB3-203ENST00000430118 TRAV20A0A0B4J274 112 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 TMPRSS2O15393 492 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 KCNQ2O43526 872 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 S100BP04271 92 aaPredicted RBP5.56□□□□□ -1.52
HMGB3-203ENST00000430118 NID1P14543 1247 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 NTF4P34130 210 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 NLRP12P59046 1061 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 FOXD4L6Q3SYB3 417 aaPredicted RBP5.56□□□□□ -1.52
HMGB3-203ENST00000430118 ANKRD39Q53RE8 183 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 FOXD4L3Q6VB84 417 aaPredicted RBP5.56□□□□□ -1.52
HMGB3-203ENST00000430118 THNSL2Q86YJ6 484 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 SCUBE1Q8IWY4 988 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 CRACR2BQ8N4Y2 399 aaPredicted RBP5.56□□□□□ -1.52
HMGB3-203ENST00000430118 GALNT11Q8NCW6 608 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 CYB5D2Q8WUJ1 264 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 STAG1Q8WVM7 1258 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 APBA2Q99767 749 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 DHRS4Q9BTZ2 278 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 RUSC1Q9BVN2 902 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 GSX1Q9H4S2 264 aaPredicted RBP5.56□□□□□ -1.52
HMGB3-203ENST00000430118 NCOA5Q9HCD5 579 aaKnown RBP5.56□□□□□ -1.52
HMGB3-203ENST00000430118 CYP4F12Q9HCS2 524 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 MAPRE3Q9UPY8 281 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 EEA1Q15075 1411 aa5.56□□□□□ -1.52
HMGB3-203ENST00000430118 ALG1L2C9J202 215 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 OIP5O43482 229 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 ADAM11O75078 769 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 CLEC3AO75596 197 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 FGFR1P11362 822 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 PABPC4Q13310 644 aaKnown RBP eCLIP5.55□□□□□ -1.52
HMGB3-203ENST00000430118 MAP7Q14244 749 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 HSP90AB2PQ58FF8 381 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 PPM1JQ5JR12 505 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 ANKLE2Q86XL3 938 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 PHACTR4Q8IZ21 702 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 GPR161Q8N6U8 529 aaKnown RBP5.55□□□□□ -1.52
HMGB3-203ENST00000430118 SMG8Q8ND04 991 aaKnown RBP5.55□□□□□ -1.52
HMGB3-203ENST00000430118 ACDQ96AP0 544 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 BTBD6Q96KE9 485 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 SLC6A18Q96N87 628 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 HAUS7Q99871 368 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 AARSD1Q9BTE6 412 aaKnown RBP5.55□□□□□ -1.52
HMGB3-203ENST00000430118 COL25A1Q9BXS0 654 aaPredicted RBP5.55□□□□□ -1.52
HMGB3-203ENST00000430118 GBP3Q9H0R5 595 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 RNF208Q9H0X6 261 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 MCM8Q9UJA3 840 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 PCDHB10Q9UN67 800 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 MRPS23Q9Y3D9 190 aaKnown RBP5.55□□□□□ -1.52
HMGB3-203ENST00000430118 DEPDC5O75140 1603 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 KIDINS220Q9ULH0 1771 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 PLXNC1O60486 1568 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 NEURL4Q96JN8 1562 aa5.55□□□□□ -1.52
HMGB3-203ENST00000430118 ATP7AQ04656 1500 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 IQGAP1P46940 1657 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 CCDC18Q5T9S5 1454 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 PLEKHH2Q8IVE3 1493 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 NLRP1Q9C000 1473 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 A0A087X0B3 334 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 A0A1W2PQU0 124 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 UBOX5O94941 541 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 CST3P01034 146 aaPredicted RBP5.54□□□□□ -1.52
HMGB3-203ENST00000430118 SUMO1P63165 101 aaKnown RBP5.54□□□□□ -1.52
HMGB3-203ENST00000430118 RNF4P78317 190 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 EXOSC10Q01780 885 aaKnown RBP5.54□□□□□ -1.52
HMGB3-203ENST00000430118 COL9A3Q14050 684 aaPredicted RBP5.54□□□□□ -1.52
HMGB3-203ENST00000430118 SV2CQ496J9 727 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 TRIM61Q5EBN2 209 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 HEATR6Q6AI08 1181 aaKnown RBP5.54□□□□□ -1.52
HMGB3-203ENST00000430118 CDC37L1Q7L3B6 337 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 FBXO11Q86XK2 927 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 TMEM192Q8IY95 271 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 MFSD2AQ8NA29 543 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 FANCD2OSQ96PS1 177 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 CEP89Q96ST8 783 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 CDC6Q99741 560 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 KLHL25Q9H0H3 589 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 ARHGEF4Q9NR80 690 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 HOMER2Q9NSB8 354 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 PRR13Q9NZ81 148 aa5.54□□□□□ -1.52
HMGB3-203ENST00000430118 MAGEC2Q9UBF1 373 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms