RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 CCDC151A5D8V7 595 aa14.05□□□□□ -0.16
CDH3-202ENST00000429102 TUBB4AP04350 444 aa14.05□□□□□ -0.16
CDH3-202ENST00000429102 MTIF2P46199 727 aaKnown RBP14.05□□□□□ -0.16
CDH3-202ENST00000429102 KCNJ6P48051 423 aa14.05□□□□□ -0.16
CDH3-202ENST00000429102 ARID5AQ03989 594 aa14.05□□□□□ -0.16
CDH3-202ENST00000429102 BEND6Q5SZJ8 279 aaPredicted RBP14.05□□□□□ -0.16
CDH3-202ENST00000429102 MMS19Q96T76 1030 aa14.05□□□□□ -0.16
CDH3-202ENST00000429102 MYO1CO00159 1063 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 PDE4CQ08493 712 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 C2orf54Q08AI8 447 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 FCHSD1Q86WN1 690 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 MTRQ99707 1265 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 KANSL2Q9H9L4 492 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 MCM9Q9NXL9 1143 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 MARF1Q9Y4F3 1742 aaKnown RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 NKRFO15226 690 aaKnown RBP eCLIP14.04□□□□□ -0.16
CDH3-202ENST00000429102 EIF3JO75822 258 aaKnown RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 ERCC5P28715 1186 aaPredicted RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 STAG2Q8N3U4 1231 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 CCDC148Q8NFR7 591 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 FAM207AQ9NSI2 230 aaPredicted RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 SAP30BPQ9UHR5 308 aaKnown RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 FEZ2Q9UHY8 353 aaPredicted RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 AFDNP55196 1824 aaKnown RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 SSBP05455 408 aaKnown RBP eCLIP14.04□□□□□ -0.16
CDH3-202ENST00000429102 PARP1P09874 1014 aaKnown RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 CYP19A1P11511 503 aaPredicted RBP14.04□□□□□ -0.16
CDH3-202ENST00000429102 IDEP14735 1019 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 SF3A3Q12874 501 aaKnown RBP eCLIP14.04□□□□□ -0.16
CDH3-202ENST00000429102 CCDC96Q2M329 555 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 BRINP3Q76B58 766 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 TANGO6Q9C0B7 1094 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 LAMA4Q16363 1823 aa14.04□□□□□ -0.16
CDH3-202ENST00000429102 CCDC194A0A1B0GVG4 234 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 RPN1P04843 607 aaKnown RBP14.03□□□□□ -0.16
CDH3-202ENST00000429102 USP17L8P0C7I0 530 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 LETM2Q2VYF4 491 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 CYP26C1Q6V0L0 522 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 SLC44A5Q8NCS7 719 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 STAG1Q8WVM7 1258 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 GPR101Q96P66 508 aaPredicted RBP14.03□□□□□ -0.16
CDH3-202ENST00000429102 PANX2Q96RD6 677 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 CTAGE1Q96RT6 745 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 PLEKP08567 350 aaPredicted RBP14.03□□□□□ -0.16
CDH3-202ENST00000429102 ARID4AP29374 1257 aaPredicted RBP14.03□□□□□ -0.16
CDH3-202ENST00000429102 IL17AQ16552 155 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 DYMQ7RTS9 669 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 APTXQ7Z2E3 356 aaKnown RBP14.03□□□□□ -0.16
CDH3-202ENST00000429102 TMTC2Q8N394 836 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 DEF6Q9H4E7 631 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 PRDX5P30044 214 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 TBC1D8BQ0IIM8 1120 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 TCP11X2Q5H9J9 407 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 CTR9Q6PD62 1173 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 EHD4Q9H223 541 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 CENPHQ9H3R5 247 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 LMO7Q8WWI1 1683 aa14.03□□□□□ -0.16
CDH3-202ENST00000429102 USP17L3A6NCW0 530 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 USP17L4A6NCW7 530 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 NDUFA10O95299 355 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 C3orf67Q6ZVT6 689 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 USP17L1Q7RTZ2 530 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 TMTC1Q8IUR5 882 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 LACRTQ9GZZ8 138 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 MMRN2Q9H8L6 949 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 MRC1P22897 1456 aa14.02□□□□□ -0.16
CDH3-202ENST00000429102 BRD3Q15059 726 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 EZH2Q15910 746 aaKnown RBP14.02□□□□□ -0.17
CDH3-202ENST00000429102 CCDC152Q4G0S7 254 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 TYW1BQ6NUM6 668 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 CSGALNACT2Q8N6G5 542 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 CRACR2AQ9BSW2 395 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 MKNK2Q9HBH9 465 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 CWC15Q9P013 229 aaKnown RBP14.02□□□□□ -0.17
CDH3-202ENST00000429102 RRP15Q9Y3B9 282 aaKnown RBP14.02□□□□□ -0.17
CDH3-202ENST00000429102 OVOS2A0A0G2JMS6 1433 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 EXOC5O00471 708 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 ASIC1P78348 528 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 PROCA1Q8NCQ7 364 aaPredicted RBP14.02□□□□□ -0.17
CDH3-202ENST00000429102 GSDMAQ96QA5 445 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 TMEM60Q9H2L4 133 aa14.02□□□□□ -0.17
CDH3-202ENST00000429102 USP5P45974 858 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 TFAP4Q01664 338 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 SMARCC1Q92922 1105 aaPredicted RBP14.01□□□□□ -0.17
CDH3-202ENST00000429102 FAM107BQ9H098 131 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 ZHX3Q9H4I2 956 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 SLC39A2Q9NP94 309 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 TTF2Q9UNY4 1162 aaKnown RBP14.01□□□□□ -0.17
CDH3-202ENST00000429102 MROH5Q6ZUA9 1318 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 CHD2O14647 1828 aaKnown RBP14.01□□□□□ -0.17
CDH3-202ENST00000429102 RNF40O75150 1001 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 ACTN2P35609 894 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 EIF6P56537 245 aaKnown RBP14.01□□□□□ -0.17
CDH3-202ENST00000429102 TRIM28Q13263 835 aaKnown RBP14.01□□□□□ -0.17
CDH3-202ENST00000429102 CAVIN4Q5BKX8 364 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 TRIML1Q8N9V2 468 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 RNF26Q9BY78 433 aaPredicted RBP14.01□□□□□ -0.17
CDH3-202ENST00000429102 RASSF4Q9H2L5 321 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 FCER1AP12319 257 aa14.01□□□□□ -0.17
CDH3-202ENST00000429102 OR8K1Q8NGG5 319 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms