RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TDHQ8IZJ6 230 aa17.4■□□□□ 0.38
SDC1-204ENST00000429035 MROH8Q9H579 483 aa17.4■□□□□ 0.38
SDC1-204ENST00000429035 LTBP2Q14767 1821 aa17.4■□□□□ 0.38
SDC1-204ENST00000429035 MINDY4BA8MYZ0 360 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 DNM1LO00429 736 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 STRNO43815 780 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 FCER1AP12319 257 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 TDO2P48775 406 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 TMEM132BQ14DG7 1078 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 OLFML2BQ68BL8 750 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 MMP19Q99542 508 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 KANSL2Q9H9L4 492 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 MKNK2Q9HBH9 465 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 ATP11BQ9Y2G3 1177 aa17.39■□□□□ 0.37
SDC1-204ENST00000429035 SMCHD1A6NHR9 2005 aa17.38■□□□□ 0.37
SDC1-204ENST00000429035 PRAMEF19Q5SWL8 479 aa17.38■□□□□ 0.37
SDC1-204ENST00000429035 KBTBD3Q8NAB2 608 aa17.38■□□□□ 0.37
SDC1-204ENST00000429035 APPBP2Q92624 585 aa17.38■□□□□ 0.37
SDC1-204ENST00000429035 LBHD1Q9BQE6 289 aaPredicted RBP17.38■□□□□ 0.37
SDC1-204ENST00000429035 PRKAG2Q9UGJ0 569 aa17.38■□□□□ 0.37
SDC1-204ENST00000429035 SLC25A27O95847 323 aa17.37■□□□□ 0.37
SDC1-204ENST00000429035 APPP05067 770 aa17.37■□□□□ 0.37
SDC1-204ENST00000429035 SLC4A3P48751 1232 aa17.37■□□□□ 0.37
SDC1-204ENST00000429035 RTP1P59025 263 aa17.37■□□□□ 0.37
SDC1-204ENST00000429035 MAML3Q96JK9 1138 aa17.37■□□□□ 0.37
SDC1-204ENST00000429035 STRBPQ96SI9 672 aaKnown RBP17.37■□□□□ 0.37
SDC1-204ENST00000429035 NUP88Q99567 741 aaPredicted RBP17.37■□□□□ 0.37
SDC1-204ENST00000429035 PRDM5Q9NQX1 630 aaPredicted RBP17.37■□□□□ 0.37
SDC1-204ENST00000429035 PPP1R9AQ9ULJ8 1098 aa17.37■□□□□ 0.37
SDC1-204ENST00000429035 ISY1Q9ULR0 285 aaKnown RBP17.37■□□□□ 0.37
SDC1-204ENST00000429035 SEPT4O43236 478 aa17.36■□□□□ 0.37
SDC1-204ENST00000429035 GPAA1O43292 621 aa17.36■□□□□ 0.37
SDC1-204ENST00000429035 PGK2P07205 417 aa17.36■□□□□ 0.37
SDC1-204ENST00000429035 KCTD2Q14681 263 aa17.36■□□□□ 0.37
SDC1-204ENST00000429035 Q7L0L9 218 aa17.36■□□□□ 0.37
SDC1-204ENST00000429035 ARRDC4Q8NCT1 418 aa17.36■□□□□ 0.37
SDC1-204ENST00000429035 OSBP2Q969R2 916 aa17.36■□□□□ 0.37
SDC1-204ENST00000429035 CTDP1Q9Y5B0 961 aaPredicted RBP17.36■□□□□ 0.37
SDC1-204ENST00000429035 GSG1L2A8MUP6 293 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 M0R2C6 588 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 RNF113AO15541 343 aaKnown RBP17.35■□□□□ 0.37
SDC1-204ENST00000429035 RASA1P20936 1047 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 FAM47AQ5JRC9 791 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 RIOX2Q8IUF8 465 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 ABRAQ8N0Z2 381 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 DEFB123Q8N688 67 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 EPB41L4AQ9HCS5 686 aaPredicted RBP17.35■□□□□ 0.37
SDC1-204ENST00000429035 ROBO3Q96MS0 1386 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 MCM3APO60318 1980 aa17.35■□□□□ 0.37
SDC1-204ENST00000429035 VWA5AO00534 786 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 PRDM1O75626 825 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 STAT3P40763 770 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 LRIT3Q3SXY7 679 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 SBK1Q52WX2 424 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 FERMT2Q96AC1 680 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 SLF1Q9BQI6 1058 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.34■□□□□ 0.37
SDC1-204ENST00000429035 DCTPP1Q9H773 170 aa17.34■□□□□ 0.37
SDC1-204ENST00000429035 NDUFB10O96000 172 aa17.33■□□□□ 0.36
SDC1-204ENST00000429035 ZFYP08048 801 aaPredicted RBP17.33■□□□□ 0.36
SDC1-204ENST00000429035 COPB2P35606 906 aa17.33■□□□□ 0.36
SDC1-204ENST00000429035 TRIM60Q495X7 471 aa17.33■□□□□ 0.36
SDC1-204ENST00000429035 SNRNP48Q6IEG0 339 aaKnown RBP17.33■□□□□ 0.36
SDC1-204ENST00000429035 LRRC47Q8N1G4 583 aaKnown RBP17.33■□□□□ 0.36
SDC1-204ENST00000429035 SLC17A8Q8NDX2 589 aa17.33■□□□□ 0.36
SDC1-204ENST00000429035 FSD1Q9BTV5 496 aa17.33■□□□□ 0.36
SDC1-204ENST00000429035 IGHA2P01877 340 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 RARBP10826 455 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 GNAT2P19087 354 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 ADCYAP1R1P41586 468 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 LRRC41Q15345 812 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 LRRFIP1Q32MZ4 808 aaKnown RBP17.32■□□□□ 0.36
SDC1-204ENST00000429035 GIMAP6Q6P9H5 292 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 ZNF444Q8N0Y2 327 aaPredicted RBP17.32■□□□□ 0.36
SDC1-204ENST00000429035 CPXCR1Q8N123 301 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 KIFC2Q96AC6 838 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 LENG1Q96BZ8 264 aaPredicted RBP17.32■□□□□ 0.36
SDC1-204ENST00000429035 XPNPEP3Q9NQH7 507 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 CLIP2Q9UDT6 1046 aa17.32■□□□□ 0.36
SDC1-204ENST00000429035 ZNF214Q9UL59 606 aaPredicted RBP17.32■□□□□ 0.36
SDC1-204ENST00000429035 F5H6K3 240 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 ERC2O15083 957 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 KLRC3Q07444 240 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 SLC39A5Q6ZMH5 540 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 REPS2Q8NFH8 660 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 CHMP4CQ96CF2 233 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 TEX13BQ9BXU2 312 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 ZNF287Q9HBT7 754 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 NYAP2Q9P242 653 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 ADAMTS5Q9UNA0 930 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 DNAH12Q6ZR08 3092 aa17.31■□□□□ 0.36
SDC1-204ENST00000429035 PGK1P00558 417 aa17.3■□□□□ 0.36
SDC1-204ENST00000429035 TAL1P17542 331 aaPredicted RBP17.3■□□□□ 0.36
SDC1-204ENST00000429035 ZNF792Q3KQV3 632 aa17.3■□□□□ 0.36
SDC1-204ENST00000429035 DDX11Q96FC9 970 aa17.3■□□□□ 0.36
SDC1-204ENST00000429035 CEP95Q96GE4 821 aa17.3■□□□□ 0.36
SDC1-204ENST00000429035 SEC62Q99442 399 aaKnown RBP17.3■□□□□ 0.36
SDC1-204ENST00000429035 TINF2Q9BSI4 451 aa17.3■□□□□ 0.36
SDC1-204ENST00000429035 NACAP1Q9BZK3 213 aa17.3■□□□□ 0.36
SDC1-204ENST00000429035 NAPBQ9H115 298 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms