RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 SLC9A7Q96T83 725 aa3.88□□□□□ -1.79
PTPRC-208ENST00000427110 ACBD3Q9H3P7 528 aa3.88□□□□□ -1.79
PTPRC-208ENST00000427110 EBF1Q9UH73 591 aa3.88□□□□□ -1.79
PTPRC-208ENST00000427110 DDX41Q9UJV9 622 aaKnown RBP3.88□□□□□ -1.79
PTPRC-208ENST00000427110 INPP5FQ9Y2H2 1132 aa3.88□□□□□ -1.79
PTPRC-208ENST00000427110 CLEC3AO75596 197 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 PRAMEF1O95521 474 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 GLI1P08151 1106 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 ZGLP1P0C6A0 271 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 TEKQ02763 1124 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 RAD51AP2Q09MP3 1159 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 PAK2Q13177 524 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 NBPF9Q3BBW0 867 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 TMEM67Q5HYA8 995 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 REXO1Q8N1G1 1221 aaKnown RBP3.87□□□□□ -1.79
PTPRC-208ENST00000427110 ABHD4Q8TB40 342 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 MYLIPQ8WY64 445 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 FERD3LQ96RJ6 166 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 HDAC8Q9BY41 377 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 FOXP3Q9BZS1 431 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 MKRN2Q9H000 416 aaKnown RBP3.87□□□□□ -1.79
PTPRC-208ENST00000427110 RNF32Q9H0A6 362 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 SP110Q9HB58 689 aa3.87□□□□□ -1.79
PTPRC-208ENST00000427110 ARID1BQ8NFD5 2236 aaPredicted RBP3.87□□□□□ -1.79
PTPRC-208ENST00000427110 MEIS3P2A8K0S8 358 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 C9IYK1 514 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 FARP2O94887 1054 aaPredicted RBP3.86□□□□□ -1.79
PTPRC-208ENST00000427110 EFEMP2O95967 443 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 HPXP02790 462 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 RAC2P15153 192 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 YBX3P16989 372 aaKnown RBP eCLIP3.86□□□□□ -1.792e-7■■□□□ 13.3
PTPRC-208ENST00000427110 RPL10P27635 214 aaKnown RBP3.86□□□□□ -1.79
PTPRC-208ENST00000427110 RNF4P78317 190 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 MESP2Q0VG99 397 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 ZYXQ15942 572 aaKnown RBP3.86□□□□□ -1.79
PTPRC-208ENST00000427110 NAALADL2Q58DX5 795 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 PPFIBP1Q86W92 1011 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 USHBP1Q8N6Y0 703 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 TCTN2Q96GX1 697 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 PRDM14Q9GZV8 571 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.86□□□□□ -1.79
PTPRC-208ENST00000427110 ASCC2Q9H1I8 757 aaPredicted RBP3.86□□□□□ -1.79
PTPRC-208ENST00000427110 NSUN3Q9H649 340 aaKnown RBP3.86□□□□□ -1.79
PTPRC-208ENST00000427110 GINM1Q9NU53 330 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 GFOD1Q9NXC2 390 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 ZNRF3Q9ULT6 936 aa3.86□□□□□ -1.79
PTPRC-208ENST00000427110 TNFRSF10CO14798 259 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 USP2O75604 605 aaPredicted RBP3.85□□□□□ -1.79
PTPRC-208ENST00000427110 SYPP08247 313 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 DNAJA1P31689 397 aaKnown RBP3.85□□□□□ -1.79
PTPRC-208ENST00000427110 WAPLQ7Z5K2 1190 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 VPS37DQ86XT2 251 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 KSR1Q8IVT5 923 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 SIRT2Q8IXJ6 389 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 SYTL5Q8TDW5 730 aaPredicted RBP3.85□□□□□ -1.79
PTPRC-208ENST00000427110 C8orf37Q96NL8 207 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 FBXL21Q9UKT6 434 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 TCFL5Q9UL49 500 aa3.85□□□□□ -1.79
PTPRC-208ENST00000427110 TMEM82A0PJX8 343 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 SIGLEC6O43699 453 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 PSPNO60542 156 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 TP53P04637 393 aaPredicted RBP3.84□□□□□ -1.79
PTPRC-208ENST00000427110 CTSKP43235 329 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 LRRFIP1Q32MZ4 808 aaKnown RBP3.84□□□□□ -1.79
PTPRC-208ENST00000427110 BBS9Q3SYG4 887 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 DCAF15Q66K64 600 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 CRTC3Q6UUV7 619 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 LSRQ86X29 649 aaPredicted RBP3.84□□□□□ -1.79
PTPRC-208ENST00000427110 DAGLBQ8NCG7 672 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 PDZD8Q8NEN9 1154 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 GPRASP2Q96D09 838 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 CCDC120Q96HB5 630 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 TINF2Q9BSI4 451 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 G6PC3Q9BUM1 346 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 KRTAP9-9Q9BYP9 154 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 KRTAP9-4Q9BYQ2 154 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 USP35Q9P2H5 1018 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 GPR160Q9UJ42 338 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 ZMYM5Q9UJ78 669 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 EFR3BQ9Y2G0 817 aa3.84□□□□□ -1.79
PTPRC-208ENST00000427110 SSU72P8A0A1W2PR75 194 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 NOTOA8MTQ0 251 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 SHOXO15266 292 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 SDHBP21912 280 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 JAG1P78504 1218 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 AUHQ13825 339 aaKnown RBP3.83□□□□□ -1.8
PTPRC-208ENST00000427110 KIR3DS1Q14943 382 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 SF3A1Q15459 793 aaKnown RBP3.83□□□□□ -1.8
PTPRC-208ENST00000427110 AXDND1Q5T1B0 1012 aaPredicted RBP3.83□□□□□ -1.8
PTPRC-208ENST00000427110 UNC5AQ6ZN44 842 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 SYDE1Q6ZW31 735 aaPredicted RBP3.83□□□□□ -1.8
PTPRC-208ENST00000427110 CCDC144CPQ8IYA2 1237 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 BRF1Q92994 677 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 FAM84AQ96KN4 292 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.83□□□□□ -1.8
PTPRC-208ENST00000427110 TANGO6Q9C0B7 1094 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 EPB41L4BQ9H329 900 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 DCP1AQ9NPI6 582 aaPredicted RBP3.83□□□□□ -1.8
PTPRC-208ENST00000427110 CHST7Q9NS84 486 aa3.83□□□□□ -1.8
PTPRC-208ENST00000427110 FAM53CQ9NYF3 392 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms