RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 RTFDC1Q9BY42 306 aaPredicted RBP13.57□□□□□ -0.24
PTPRN-204ENST00000423636 ARPP21Q9UBL0 812 aaPredicted RBP13.57□□□□□ -0.24
PTPRN-204ENST00000423636 MAD2L2Q9UI95 211 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 TUBE1Q9UJT0 475 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 NAPAP54920 295 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 RAD51AP2Q09MP3 1159 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 SLC30A10Q6XR72 485 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 WDR66Q8TBY9 1149 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 ZNF215Q9UL58 517 aaPredicted RBP13.57□□□□□ -0.24
PTPRN-204ENST00000423636 STK36Q9NRP7 1315 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 SMTNL1A8MU46 457 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 CCNT1O60563 726 aaKnown RBP13.57□□□□□ -0.24
PTPRN-204ENST00000423636 PPP4R3BQ5MIZ7 849 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 SARM1Q6SZW1 724 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 CCAR2Q8N163 923 aaKnown RBP13.57□□□□□ -0.24
PTPRN-204ENST00000423636 CCDC112Q8NEF3 446 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 DNAI1Q9UI46 699 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 TFR2Q9UP52 801 aa13.57□□□□□ -0.24
PTPRN-204ENST00000423636 NKRFO15226 690 aaKnown RBP eCLIP13.56□□□□□ -0.24
PTPRN-204ENST00000423636 MMP10P09238 476 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 AKR1B1P15121 316 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 UBE2SQ16763 222 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 BLIDQ8IZY5 108 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.56□□□□□ -0.24
PTPRN-204ENST00000423636 NRAPQ86VF7 1730 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 FLT1P17948 1338 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 TECP42680 631 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 COL23A1Q86Y22 540 aaPredicted RBP13.56□□□□□ -0.24
PTPRN-204ENST00000423636 KRT27Q7Z3Y8 459 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 AMOTL1Q8IY63 956 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 LRRC15Q8TF66 581 aa13.56□□□□□ -0.24
PTPRN-204ENST00000423636 ZC3H12CQ9C0D7 883 aaKnown RBP13.56□□□□□ -0.24
PTPRN-204ENST00000423636 MYH6P13533 1939 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 TNRC6CQ9HCJ0 1690 aaKnown RBP13.55□□□□□ -0.24
PTPRN-204ENST00000423636 PFKFB3Q16875 520 aaPredicted RBP13.55□□□□□ -0.24
PTPRN-204ENST00000423636 SPTY2D1Q68D10 685 aaPredicted RBP13.55□□□□□ -0.24
PTPRN-204ENST00000423636 TOGARAM2Q6ZUX3 1019 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 TRMT1LQ7Z2T5 733 aaKnown RBP13.55□□□□□ -0.24
PTPRN-204ENST00000423636 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.55□□□□□ -0.24
PTPRN-204ENST00000423636 LZTFL1Q9NQ48 299 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 TAB2Q9NYJ8 693 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 BTAF1O14981 1849 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 TXKP42681 527 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 TICAM2Q86XR7 235 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 RBM17Q96I25 401 aaKnown RBP13.55□□□□□ -0.24
PTPRN-204ENST00000423636 PPP1R13BQ96KQ4 1090 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 NUP88Q99567 741 aaPredicted RBP13.55□□□□□ -0.24
PTPRN-204ENST00000423636 USP40Q9NVE5 1235 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 DAGLAQ9Y4D2 1042 aa13.55□□□□□ -0.24
PTPRN-204ENST00000423636 ABL1P00519 1130 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 MKRN1Q9UHC7 482 aaKnown RBP13.54□□□□□ -0.24
PTPRN-204ENST00000423636 ECM29Q5VYK3 1845 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 SMCO2A6NFE2 343 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 SOWAHDA6NJG2 315 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 DYNC1I1O14576 645 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 LRP5O75197 1615 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 POLRMTO00411 1230 aaKnown RBP13.54□□□□□ -0.24
PTPRN-204ENST00000423636 PPEF1O14829 653 aaPredicted RBP13.54□□□□□ -0.24
PTPRN-204ENST00000423636 TPM3P06753 285 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 RBM28Q9NW13 759 aaKnown RBP13.54□□□□□ -0.24
PTPRN-204ENST00000423636 TRPC5Q9UL62 973 aaPredicted RBP13.54□□□□□ -0.24
PTPRN-204ENST00000423636 PCDHA6Q9UN73 950 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 CEP131Q9UPN4 1083 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 LEMD3Q9Y2U8 911 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 PCDHA8Q9Y5H6 950 aa13.54□□□□□ -0.24
PTPRN-204ENST00000423636 ORC4O43929 436 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 GDF11O95390 407 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 STAT6P42226 847 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 RHBDL3P58872 404 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 CACNB1Q02641 598 aaPredicted RBP13.53□□□□□ -0.24
PTPRN-204ENST00000423636 ELF2Q15723 593 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 CCDC96Q2M329 555 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 DYMQ7RTS9 669 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 SPICE1Q8N0Z3 855 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 RNF225M0QZC1 329 aaPredicted RBP13.53□□□□□ -0.24
PTPRN-204ENST00000423636 FANCGO15287 622 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 KIF5BP33176 963 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 PMS1P54277 932 aaKnown RBP13.53□□□□□ -0.24
PTPRN-204ENST00000423636 TNFRSF25Q93038 417 aa13.53□□□□□ -0.24
PTPRN-204ENST00000423636 DDAH1O94760 285 aa13.52□□□□□ -0.24
PTPRN-204ENST00000423636 CAVIN2O95810 425 aa13.52□□□□□ -0.24
PTPRN-204ENST00000423636 SSBP05455 408 aaKnown RBP eCLIP13.52□□□□□ -0.24
PTPRN-204ENST00000423636 TNNI2P48788 182 aa13.52□□□□□ -0.24
PTPRN-204ENST00000423636 MORC3Q14149 939 aa13.52□□□□□ -0.24
PTPRN-204ENST00000423636 IRS2Q9Y4H2 1338 aa13.52□□□□□ -0.24
PTPRN-204ENST00000423636 DUOX1Q9NRD9 1551 aa13.52□□□□□ -0.24
PTPRN-204ENST00000423636 RRP9O43818 475 aaKnown RBP13.52□□□□□ -0.24
PTPRN-204ENST00000423636 URI1O94763 535 aaPredicted RBP13.52□□□□□ -0.24
PTPRN-204ENST00000423636 HINFPQ9BQA5 517 aa13.52□□□□□ -0.24
PTPRN-204ENST00000423636 PARP1P09874 1014 aaKnown RBP13.52□□□□□ -0.25
PTPRN-204ENST00000423636 SLFN14P0C7P3 912 aa13.52□□□□□ -0.25
PTPRN-204ENST00000423636 NCBP1Q09161 790 aaKnown RBP13.52□□□□□ -0.25
PTPRN-204ENST00000423636 ZYXQ15942 572 aaKnown RBP13.52□□□□□ -0.25
PTPRN-204ENST00000423636 CCDC178Q5BJE1 867 aa13.52□□□□□ -0.25
PTPRN-204ENST00000423636 CCDC84Q86UT8 332 aaPredicted RBP13.52□□□□□ -0.25
PTPRN-204ENST00000423636 TIGD1Q96MW7 591 aa13.52□□□□□ -0.25
PTPRN-204ENST00000423636 KANSL2Q9H9L4 492 aa13.52□□□□□ -0.25
PTPRN-204ENST00000423636 TBC1D7Q9P0N9 293 aa13.52□□□□□ -0.25
PTPRN-204ENST00000423636 SEMA3EO15041 775 aa13.51□□□□□ -0.25
PTPRN-204ENST00000423636 CALM1P0DP23 149 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms