RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 SHCBP1Q8NEM2 672 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.78□□□□□ -0.84
VIM-202ENST00000421459 NUP88Q99567 741 aaPredicted RBP9.78□□□□□ -0.84
VIM-202ENST00000421459 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.78□□□□□ -0.84
VIM-202ENST00000421459 COL25A1Q9BXS0 654 aaPredicted RBP9.78□□□□□ -0.84
VIM-202ENST00000421459 PUS7LQ9H0K6 701 aaKnown RBP9.78□□□□□ -0.84
VIM-202ENST00000421459 PRKAG2Q9UGJ0 569 aa9.78□□□□□ -0.84
VIM-202ENST00000421459 FCER1AP12319 257 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 ATP5JP18859 108 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 EPHB4P54760 987 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 TLE2Q04725 743 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 FAM83BQ5T0W9 1011 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 CTR9Q6PD62 1173 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 TMED8Q6PL24 325 aaPredicted RBP9.77□□□□□ -0.85
VIM-202ENST00000421459 C16orf86Q6ZW13 317 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 MMP19Q99542 508 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 MROH8Q9H579 483 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 ARHGEF10LQ9HCE6 1279 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 PDLIM7Q9NR12 457 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 ATP8A2Q9NTI2 1148 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 ZBTB40Q9NUA8 1239 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 SWAP70Q9UH65 585 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 SLC4A4Q9Y6R1 1079 aa9.77□□□□□ -0.85
VIM-202ENST00000421459 VWA5AO00534 786 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 SLC4A3P48751 1232 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 SNX17Q15036 470 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 ZNF792Q3KQV3 632 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 C20orf194Q5TEA3 1177 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 FAM109BQ6ICB4 259 aaPredicted RBP9.76□□□□□ -0.85
VIM-202ENST00000421459 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.76□□□□□ -0.85
VIM-202ENST00000421459 RPAP2Q8IXW5 612 aaPredicted RBP9.76□□□□□ -0.85
VIM-202ENST00000421459 MB21D1Q8N884 522 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 REPS2Q8NFH8 660 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 CDX2Q99626 313 aaPredicted RBP9.76□□□□□ -0.85
VIM-202ENST00000421459 HAUS7Q99871 368 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 TTYH1Q9H313 450 aaPredicted RBP9.76□□□□□ -0.85
VIM-202ENST00000421459 SEMA6BQ9H3T3 888 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 XPNPEP3Q9NQH7 507 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 ADAMTS5Q9UNA0 930 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 RIPK3Q9Y572 518 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 NAV1Q8NEY1 1877 aa9.76□□□□□ -0.85
VIM-202ENST00000421459 FRMPD3Q5JV73 1810 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 WDR46O15213 610 aaKnown RBP9.75□□□□□ -0.85
VIM-202ENST00000421459 RAB11FIP3O75154 756 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 ZNF865P0CJ78 1059 aaPredicted RBP9.75□□□□□ -0.85
VIM-202ENST00000421459 STAT3P40763 770 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 ZNF697Q5TEC3 545 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 TSHZ3Q63HK5 1081 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 RIOX2Q8IUF8 465 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 ABRAQ8N0Z2 381 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 MYLIPQ8WY64 445 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 CHMP4CQ96CF2 233 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 CCDC17Q96LX7 622 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 TINF2Q9BSI4 451 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 PPP1R9AQ9ULJ8 1098 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 RLFQ13129 1914 aa9.75□□□□□ -0.85
VIM-202ENST00000421459 A0A0G2JMZ2 1700 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 MYADML2A6NDP7 307 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 PQBP1O60828 265 aaKnown RBP9.74□□□□□ -0.85
VIM-202ENST00000421459 SLC25A27O95847 323 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 SNAI1O95863 264 aaPredicted RBP9.74□□□□□ -0.85
VIM-202ENST00000421459 RARBP10826 455 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 RASA1P20936 1047 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 UBE3CQ15386 1083 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 OSBP2Q969R2 916 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 STRBPQ96SI9 672 aaKnown RBP9.74□□□□□ -0.85
VIM-202ENST00000421459 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.74□□□□□ -0.85
VIM-202ENST00000421459 SH2D4AQ9H788 454 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 KANSL2Q9H9L4 492 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 SLC5A4Q9NY91 659 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 ZNF214Q9UL59 606 aaPredicted RBP9.74□□□□□ -0.85
VIM-202ENST00000421459 PHF24Q9UPV7 400 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 ZBED9Q6R2W3 1325 aa9.74□□□□□ -0.85
VIM-202ENST00000421459 A0A1W2PQ45 241 aaPredicted RBP9.73□□□□□ -0.85
VIM-202ENST00000421459 A0A1W2PQY0 241 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 GSG1L2A8MUP6 293 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 MINDY4BA8MYZ0 360 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 F5H6K3 240 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 ADCY6O43306 1168 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 ADAMTS4O75173 837 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 HMMRO75330 724 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 PRDM1O75626 825 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 CLTBP09497 229 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 KLRC3Q07444 240 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 KCTD2Q14681 263 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 SNRNP48Q6IEG0 339 aaKnown RBP9.73□□□□□ -0.85
VIM-202ENST00000421459 CPXCR1Q8N123 301 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 RAVER2Q9HCJ3 691 aaKnown RBP9.73□□□□□ -0.85
VIM-202ENST00000421459 GOPCQ9HD26 462 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 CLIP2Q9UDT6 1046 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 DDX19BQ9UMR2 479 aa9.73□□□□□ -0.85
VIM-202ENST00000421459 NDUFB10O96000 172 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 PTGS1P23219 599 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 FAAP100Q0VG06 881 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 KCNA10Q16322 511 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 C1orf53Q5VUE5 145 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 RNF180Q86T96 592 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 AMOTL1Q8IY63 956 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 MAFAQ8NHW3 353 aaPredicted RBP9.72□□□□□ -0.85
VIM-202ENST00000421459 SLF1Q9BQI6 1058 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms