RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 TOP1P11387 765 aaKnown RBP14.69□□□□□ -0.06
SKA1-203ENST00000417656 LACTBP83111 547 aaPredicted RBP14.69□□□□□ -0.06
SKA1-203ENST00000417656 FAM110CQ1W6H9 321 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 SLFN13Q68D06 897 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 POTEEQ6S8J3 1075 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 IQCA1Q86XH1 822 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 NCOA7Q8NI08 942 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 TMEM47Q9BQJ4 181 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 UBAC1Q9BSL1 405 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 PAGR1Q9BTK6 254 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 TXNRD2Q9NNW7 524 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 FBXO28Q9NVF7 368 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 ZSWIM5Q9P217 1185 aa14.69□□□□□ -0.06
SKA1-203ENST00000417656 ISY1Q9ULR0 285 aaKnown RBP14.69□□□□□ -0.06
SKA1-203ENST00000417656 CTGFP29279 349 aa14.68□□□□□ -0.06
SKA1-203ENST00000417656 RNF20Q5VTR2 975 aa14.68□□□□□ -0.06
SKA1-203ENST00000417656 CTU1Q7Z7A3 348 aaKnown RBP14.68□□□□□ -0.06
SKA1-203ENST00000417656 MB21D2Q8IYB1 491 aaPredicted RBP14.68□□□□□ -0.06
SKA1-203ENST00000417656 ENAHQ8N8S7 591 aaPredicted RBP14.68□□□□□ -0.06
SKA1-203ENST00000417656 GTF3C2Q8WUA4 911 aaPredicted RBP14.68□□□□□ -0.06
SKA1-203ENST00000417656 ATG4CQ96DT6 458 aa14.68□□□□□ -0.06
SKA1-203ENST00000417656 ZSCAN10Q96SZ4 725 aaPredicted RBP14.68□□□□□ -0.06
SKA1-203ENST00000417656 MORF4L1Q9UBU8 362 aa14.68□□□□□ -0.06
SKA1-203ENST00000417656 CNMDO75829 334 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 ANTXR2P58335 489 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 COL9A3Q14050 684 aaPredicted RBP14.67□□□□□ -0.06
SKA1-203ENST00000417656 COG2Q14746 738 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 KIF22Q14807 665 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 CCDC96Q2M329 555 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 CCDC178Q5BJE1 867 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 LBX2Q6XYB7 198 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 CHST3Q7LGC8 479 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 RASEFQ8IZ41 740 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 GMCL1Q96IK5 515 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 TTC14Q96N46 770 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 RBPJLQ9UBG7 517 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 TRIM17Q9Y577 477 aa14.67□□□□□ -0.06
SKA1-203ENST00000417656 MYPNQ86TC9 1320 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 BMP3P12645 472 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 MCCP23508 829 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 SLC1A4P43007 532 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 ERVK-9P63128 1117 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 ERVK-24P63145 666 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 SEC23AQ15436 765 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 OTOP1Q7RTM1 612 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 DGKHQ86XP1 1220 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 TRIM47Q96LD4 638 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 SLF1Q9BQI6 1058 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 BTBD7Q9P203 1132 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 PPP1R9AQ9ULJ8 1098 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 RABGAP1Q9Y3P9 1069 aa14.66□□□□□ -0.06
SKA1-203ENST00000417656 HSPA4P34932 840 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 PSMC4P43686 418 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 FCGRTP55899 365 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 MKRN4PQ13434 485 aaPredicted RBP14.65□□□□□ -0.06
SKA1-203ENST00000417656 IFIT1BQ5T764 474 aaKnown RBP14.65□□□□□ -0.06
SKA1-203ENST00000417656 KCTD1Q719H9 257 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 PNMA1Q8ND90 353 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 GPRC5AQ8NFJ5 357 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 DCAF4Q8WV16 495 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 ANKS1AQ92625 1134 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 KAT14Q9H8E8 782 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 EFCC1Q9HA90 598 aa14.65□□□□□ -0.06
SKA1-203ENST00000417656 FRMPD2Q68DX3 1309 aaPredicted RBP14.65□□□□□ -0.06
SKA1-203ENST00000417656 PLXNB2O15031 1838 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 TMEM232C9JQI7 657 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 IFIT3O14879 490 aaKnown RBP14.64□□□□□ -0.07
SKA1-203ENST00000417656 PRC1O43663 620 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 FMNL1O95466 1100 aaPredicted RBP14.64□□□□□ -0.07
SKA1-203ENST00000417656 PDHBP11177 359 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 ZKSCAN1P17029 563 aaPredicted RBP14.64□□□□□ -0.07
SKA1-203ENST00000417656 Q3C1V9 767 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 ADCK5Q3MIX3 580 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 KIFC2Q96AC6 838 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 MCOLN1Q9GZU1 580 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 PORCNQ9H237 461 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 SENP2Q9HC62 589 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 HOXC10Q9NYD6 342 aa14.64□□□□□ -0.07
SKA1-203ENST00000417656 ERICH2A1L162 156 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 VWA5AO00534 786 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 TNPO2O14787 897 aaKnown RBP14.63□□□□□ -0.07
SKA1-203ENST00000417656 STAT2P52630 851 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 IKQ13123 557 aaPredicted RBP14.63□□□□□ -0.07
SKA1-203ENST00000417656 WTAPQ15007 396 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 SART3Q15020 963 aaKnown RBP14.63□□□□□ -0.07
SKA1-203ENST00000417656 TMEM67Q5HYA8 995 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 MB21D1Q8N884 522 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 KCNB2Q92953 911 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 NEK1Q96PY6 1258 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 GPHNQ9NQX3 736 aaPredicted RBP14.63□□□□□ -0.07
SKA1-203ENST00000417656 FEM1BQ9UK73 627 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 ADAMTS5Q9UNA0 930 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 SNX14Q9Y5W7 946 aa14.63□□□□□ -0.07
SKA1-203ENST00000417656 ZNF236Q9UL36 1845 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 SH2B2O14492 632 aaPredicted RBP14.62□□□□□ -0.07
SKA1-203ENST00000417656 EPB41L2O43491 1005 aaKnown RBP14.62□□□□□ -0.07
SKA1-203ENST00000417656 SNHG28P0DPA3 235 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 MCM5P33992 734 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 ZNF543Q08ER8 600 aa14.62□□□□□ -0.07
SKA1-203ENST00000417656 KRT32Q14532 448 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms