RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ISY1Q9ULR0 285 aaKnown RBP17.2■□□□□ 0.34
LIMS1-206ENST00000414829 CTDP1Q9Y5B0 961 aaPredicted RBP17.2■□□□□ 0.34
LIMS1-206ENST00000414829 TACC3Q9Y6A5 838 aa17.2■□□□□ 0.34
LIMS1-206ENST00000414829 NMT2O60551 498 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 FMNL1O95466 1100 aaPredicted RBP17.19■□□□□ 0.34
LIMS1-206ENST00000414829 MCCP23508 829 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 DSG3P32926 999 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 PSMC4P43686 418 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 STAT2P52630 851 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 ERVK-9P63128 1117 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 ERVK-24P63145 666 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 NECTIN1Q15223 517 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 IFIT1BQ5T764 474 aaKnown RBP17.19■□□□□ 0.34
LIMS1-206ENST00000414829 COL13A1Q5TAT6 717 aaPredicted RBP17.19■□□□□ 0.34
LIMS1-206ENST00000414829 OTOP1Q7RTM1 612 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 PRPF38AQ8NAV1 312 aaKnown RBP17.19■□□□□ 0.34
LIMS1-206ENST00000414829 CHURC1Q8WUH1 139 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 ANKS1AQ92625 1134 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 COA7Q96BR5 231 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 PAGR1Q9BTK6 254 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 CWC22Q9HCG8 908 aaKnown RBP17.19■□□□□ 0.34
LIMS1-206ENST00000414829 ZSWIM5Q9P217 1185 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 PPP1R9AQ9ULJ8 1098 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 TNKSO95271 1327 aa17.19■□□□□ 0.34
LIMS1-206ENST00000414829 TNPO2O14787 897 aaKnown RBP17.18■□□□□ 0.34
LIMS1-206ENST00000414829 PLA2G6O60733 806 aa17.18■□□□□ 0.34
LIMS1-206ENST00000414829 HMGB1P09429 215 aaKnown RBP17.18■□□□□ 0.34
LIMS1-206ENST00000414829 IKQ13123 557 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-206ENST00000414829 CCDC96Q2M329 555 aa17.18■□□□□ 0.34
LIMS1-206ENST00000414829 KIAA1755Q5JYT7 1200 aa17.18■□□□□ 0.34
LIMS1-206ENST00000414829 GPATCH4Q5T3I0 446 aaKnown RBP17.18■□□□□ 0.34
LIMS1-206ENST00000414829 FBXO46Q6PJ61 603 aaPredicted RBP17.18■□□□□ 0.34
LIMS1-206ENST00000414829 SOCS4Q8WXH5 440 aa17.18■□□□□ 0.34
LIMS1-206ENST00000414829 TMEM47Q9BQJ4 181 aa17.18■□□□□ 0.34
LIMS1-206ENST00000414829 MCM5P33992 734 aa17.17■□□□□ 0.34
LIMS1-206ENST00000414829 TSGA10IPQ3SY00 556 aa17.17■□□□□ 0.34
LIMS1-206ENST00000414829 ENAHQ8N8S7 591 aaPredicted RBP17.17■□□□□ 0.34
LIMS1-206ENST00000414829 RBPJLQ9UBG7 517 aa17.17■□□□□ 0.34
LIMS1-206ENST00000414829 PNMA2Q9UL42 364 aa17.17■□□□□ 0.34
LIMS1-206ENST00000414829 IFIT3O14879 490 aaKnown RBP17.16■□□□□ 0.34
LIMS1-206ENST00000414829 ZBED4O75132 1171 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 TMTC2Q8N394 836 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 PNMA1Q8ND90 353 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 SHCBP1Q8NEM2 672 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 TMEM87BQ96K49 555 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 SRRDQ9UH36 339 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 IVNS1ABPQ9Y6Y0 642 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 WDR19Q8NEZ3 1342 aa17.16■□□□□ 0.34
LIMS1-206ENST00000414829 VWA5AO00534 786 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 SLC25A27O95847 323 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 PDHBP11177 359 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 OAZ1P54368 228 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 WTAPQ15007 396 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 ASPRV1Q53RT3 343 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 MB21D2Q8IYB1 491 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-206ENST00000414829 ATG4CQ96DT6 458 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 TRIM47Q96LD4 638 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 NUP88Q99567 741 aaPredicted RBP17.15■□□□□ 0.34
LIMS1-206ENST00000414829 ZKSCAN3Q9BRR0 538 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 MCOLN1Q9GZU1 580 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 SPATC1LQ9H0A9 340 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 TXNRD2Q9NNW7 524 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 ADAMTS5Q9UNA0 930 aa17.15■□□□□ 0.34
LIMS1-206ENST00000414829 TMEM232C9JQI7 657 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 ATP2A1O14983 1001 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 SNHG28P0DPA3 235 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 PSMA5P28066 241 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 HSPA4P34932 840 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 TMEM67Q5HYA8 995 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
LIMS1-206ENST00000414829 STOX1Q6ZVD7 989 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 RAET1EQ8TD07 263 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 KIFC2Q96AC6 838 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 TEX13BQ9BXU2 312 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 MROH8Q9H579 483 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 FBXO28Q9NVF7 368 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 PTPN22Q9Y2R2 807 aa17.14■□□□□ 0.33
LIMS1-206ENST00000414829 PRC1O43663 620 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 ZNF543Q08ER8 600 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 IRF5Q13568 498 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 PLS1Q14651 629 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 CYB5R4Q7L1T6 521 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 CATIPQ7Z7H3 387 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 NBPF11Q86T75 865 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 NEK1Q96PY6 1258 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 ARHGAP39Q9C0H5 1083 aa17.13■□□□□ 0.33
LIMS1-206ENST00000414829 STRNO43815 780 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 CNMDO75829 334 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 SEC23AQ15436 765 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 WDR78Q5VTH9 848 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 BTNL9Q6UXG8 535 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 KCTD1Q719H9 257 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 PLEKHH3Q7Z736 793 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 RIOX2Q8IUF8 465 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 TRMT44Q8IYL2 757 aaKnown RBP17.12■□□□□ 0.33
LIMS1-206ENST00000414829 ABRAQ8N0Z2 381 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 SLAIN1Q8ND83 568 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 KCNB2Q92953 911 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 NUDT12Q9BQG2 462 aa17.12■□□□□ 0.33
LIMS1-206ENST00000414829 SLC38A10Q9HBR0 1119 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms