RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SH3GL3Q99963 347 aa14.59□□□□□ -0.07
CCDC88A-204ENST00000413716 MAGEB6P1A0A0J9YX57 407 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 PDE4DQ08499 809 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 MCF2L2Q86YR7 1114 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 OR9Q1Q8NGQ5 310 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 KLHL29Q96CT2 875 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 LRRC37BQ96QE4 947 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 PASKQ96RG2 1323 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 GNA14O95837 355 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 SSH1Q8WYL5 1049 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 TRPC6Q9Y210 931 aa14.58□□□□□ -0.07
CCDC88A-204ENST00000413716 KRT75O95678 551 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 NCAPH2Q6IBW4 605 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 TRAIPQ9BWF2 469 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 DDX28Q9NUL7 540 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 DKC1O60832 514 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 NBPF10Q6P3W6 841 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 CCDC84Q86UT8 332 aaPredicted RBP14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 SRRM1Q8IYB3 904 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 FLCNQ8NFG4 579 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 STRIP2Q9ULQ0 834 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 SESN1Q9Y6P5 492 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 M0QZ92 97 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 KLHL30Q0D2K2 578 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 PLEKHM3Q6ZWE6 761 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 ATP6V1E2Q96A05 226 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 TTC25Q96NG3 672 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 GPHNQ9NQX3 736 aaPredicted RBP14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 FGFR1OP2Q9NVK5 253 aa14.58□□□□□ -0.08
CCDC88A-204ENST00000413716 KPNA2P52292 529 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 TTC1Q99614 292 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 MIS12Q9H081 205 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 MYO1AQ9UBC5 1043 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 TYW5A2RUC4 315 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 RASGRF2O14827 1237 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 GCNT3O95395 438 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 C16orf71Q8IYS4 520 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 KRT19P08727 400 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 PSMC1P62191 440 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 TRPC1P48995 793 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 GRM1Q13255 1194 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 TRPC5Q9UL62 973 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 PSDA5PKW4 1024 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 TCP11Q8WWU5 503 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 HEXIM1O94992 359 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 MPRIPQ6WCQ1 1025 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 GLT8D2Q9H1C3 349 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 SNRKQ9NRH2 765 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 HNRNPCP07910 306 aaKnown RBP eCLIP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 WARS2Q9UGM6 360 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 ZNF229Q9UJW7 825 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 ARHGEF35A5YM69 484 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 CAPN9O14815 690 aa14.57□□□□□ -0.08
CCDC88A-204ENST00000413716 FAM180AQ6UWF9 173 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 ANGPTL8Q6UXH0 198 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 SH3GL2Q99962 352 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 ENOX1Q8TC92 643 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 BIN2Q9UBW5 565 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 RARSP54136 660 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 APBA1Q02410 837 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 CCDC15Q0P6D6 951 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 KIF22Q14807 665 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 NAF1Q96HR8 494 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 INTUQ9ULD6 942 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 PSMD7P51665 324 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 MED10Q9BTT4 135 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 KRT87PA6NCN2 255 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 TPCN1Q9ULQ1 816 aa14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 PAIP2BQ9ULR5 123 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-204ENST00000413716 GFM2Q969S9 779 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 STMN3Q9NZ72 180 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 HECW1Q76N89 1606 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 PYGBP11216 843 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 SLC9A5Q14940 896 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 LONRF3Q496Y0 759 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 PPP6R3Q5H9R7 873 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 TYW1BQ6NUM6 668 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 KLC3Q6P597 504 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 TEX13AQ9BXU3 409 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 CHCHD3Q9NX63 227 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 RBM8AQ9Y5S9 174 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 GSNP06396 782 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 HADHQ16836 314 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 NBPF5PQ86XG9 351 aaPredicted RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 DAB1O75553 588 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 BRD2P25440 801 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 SPOUT1Q5T280 376 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 TSHZ3Q63HK5 1081 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 LRRC8BQ6P9F7 803 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 RINLQ6ZS11 566 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 RRP15Q9Y3B9 282 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 PUM3Q15397 648 aaKnown RBP14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 KCNK3O14649 394 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 TRIM37O94972 964 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 DNM2P50570 870 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 PKD2L1Q9P0L9 805 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 HFM1A2PYH4 1435 aa14.55□□□□□ -0.08
CCDC88A-204ENST00000413716 POLR2DO15514 142 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms