RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 ZNF341Q9BYN7 854 aa7.7□□□□□ -1.18
VPS41-204ENST00000413141 ZSCAN16Q9H4T2 348 aaPredicted RBP7.7□□□□□ -1.18
VPS41-204ENST00000413141 ARHGEF10LQ9HCE6 1279 aa7.7□□□□□ -1.18
VPS41-204ENST00000413141 GJB4Q9NTQ9 266 aa7.7□□□□□ -1.18
VPS41-204ENST00000413141 hCG_1642624A0A1W2PR95 340 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 POTECB2RU33 542 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 KIF28PB7ZC32 967 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 CTNND1O60716 968 aaKnown RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 NDUFB10O96000 172 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 MMP1P03956 469 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 SCG2P13521 617 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 SMARCA1P28370 1054 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 ECE1P42892 770 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 SLC1A4P43007 532 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 KIF23Q02241 960 aaPredicted RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 DNM1Q05193 864 aaKnown RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 TRIM29Q14134 588 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 NBR1Q14596 966 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 CCDC96Q2M329 555 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 FOXD4L6Q3SYB3 417 aaPredicted RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 PRAMEF18Q5VWM3 479 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 SLFN13Q68D06 897 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 MCTP1Q6DN14 999 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 FOXD4L3Q6VB84 417 aaPredicted RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 SULF1Q8IWU6 871 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 ZC3H15Q8WU90 426 aaKnown RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 DCPSQ96C86 337 aaKnown RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 GMCL1Q96IK5 515 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 WRNIP1Q96S55 665 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 CPVLQ9H3G5 476 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 TAF1DQ9H5J8 278 aaPredicted RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 SH2D4AQ9H788 454 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 GINM1Q9NU53 330 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 VPS54Q9P1Q0 977 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 ZNF112Q9UJU3 913 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 TMX2Q9Y320 296 aa7.69□□□□□ -1.18
VPS41-204ENST00000413141 V9GY48 417 aaPredicted RBP7.69□□□□□ -1.18
VPS41-204ENST00000413141 PHIPQ8WWQ0 1821 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 F5H6K3 240 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 GOLGA6L22H0YM25 854 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 HAX1O00165 279 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 RAD21O60216 631 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 XBP1P17861 261 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 PTMSP20962 102 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 INPP5BP32019 993 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 KLRC3Q07444 240 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 SUPT20HL1Q3ZLR7 823 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 NOL9Q5SY16 702 aaKnown RBP7.68□□□□□ -1.18
VPS41-204ENST00000413141 WWC2Q6AWC2 1192 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 FAM173BQ6P4H8 233 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 KCTD1Q719H9 257 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 KRT26Q7Z3Y9 468 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 BRAPQ7Z569 592 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 CCDC84Q86UT8 332 aaPredicted RBP7.68□□□□□ -1.18
VPS41-204ENST00000413141 USP48Q86UV5 1035 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 PNMA8AQ86V59 439 aaPredicted RBP7.68□□□□□ -1.18
VPS41-204ENST00000413141 SCYL3Q8IZE3 742 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 TMEM87AQ8NBN3 555 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 ACER1Q8TDN7 264 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 PIBF1Q8WXW3 757 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 GPKOWQ92917 476 aaPredicted RBP eCLIP7.68□□□□□ -1.18
VPS41-204ENST00000413141 RRP36Q96EU6 259 aaKnown RBP7.68□□□□□ -1.18
VPS41-204ENST00000413141 PHF20Q9BVI0 1012 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 GLIS2Q9BZE0 524 aaPredicted RBP7.68□□□□□ -1.18
VPS41-204ENST00000413141 RIOX1Q9H6W3 641 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 GOPCQ9HD26 462 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 GPCPD1Q9NPB8 672 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 KCNJ14Q9UNX9 436 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 CNPY2Q9Y2B0 182 aa7.68□□□□□ -1.18
VPS41-204ENST00000413141 hCG_1984214I3L0E3 225 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 FIBPO43427 364 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 BMP3P12645 472 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 NCLP19338 710 aaKnown RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 U2AF2P26368 475 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS41-204ENST00000413141 KRT85P78386 507 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 SAFBQ15424 915 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS41-204ENST00000413141 NPY5RQ15761 445 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 EAPPQ56P03 285 aaPredicted RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 KIAA1755Q5JYT7 1200 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 TTBK2Q6IQ55 1244 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 DLK2Q6UY11 383 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 HOMER1Q86YM7 354 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 DIS3L2Q8IYB7 885 aaKnown RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 ADGRF4Q8IZF3 695 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 SPICE1Q8N0Z3 855 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 FAM177A1Q8N128 213 aaPredicted RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 PIP4P2Q8N4L2 257 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 ZNF713Q8N859 430 aaPredicted RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 CCDC148Q8NFR7 591 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.67□□□□□ -1.18
VPS41-204ENST00000413141 KLRG1Q96E93 195 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 CDCA5Q96FF9 252 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 PIGSQ96S52 555 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 NUP88Q99567 741 aaPredicted RBP7.67□□□□□ -1.18
VPS41-204ENST00000413141 FEZ1Q99689 392 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 UBA5Q9GZZ9 404 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 VCPKMTQ9H867 229 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 GDPD2Q9HCC8 539 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 SH3GLB2Q9NR46 395 aa7.67□□□□□ -1.18
VPS41-204ENST00000413141 BARHL2Q9NY43 387 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms